Molecular anatomy of the pre-primitive-streak chick embryo

Cell Division Drives Epithelial Cell Rearrangements during Gastrulation in Chick

(2016) Joao Firmino et al.   DEVELOPMENTAL CELL

DAZLExpression Explains Origin and Central Formation of Primordial Germ Cells in Chickens

(2016) Hyung Chul Lee et al.   STEM CELLS AND DEVELOPMENT

Myosin-II-mediated cell shape changes and cell intercalation contribute to primitive streak formation

(2015) Emil Rozbicki et al.   NATURE CELL BIOLOGY

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

The transcription factor Pitx2 positions the embryonic axis and regulates twinning

(2014) Angela Torlopp et al.   eLife

Local cell interactions and self-amplifying individual cell ingression drive amniote gastrulation

(2014) Octavian Voiculescu et al.   eLife

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Gata2 provides an early anterior bias and uncovers a global positioning system for polarity in the amniote embryo

(2012) F. Bertocchini et al.   DEVELOPMENT

The hypoblast (visceral endoderm): an evo-devo perspective

(2012) C. D. Stern et al.   DEVELOPMENT

Fiji: an open-source platform for biological-image analysis

(2012) Johannes Schindelin et al.   NATURE METHODS

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Globally optimal stitching of tiled 3D microscopic image acquisitions

(2009) S. Preibisch et al.   BIOINFORMATICS

A differential screen for genes expressed in the extraembryonic endodermal layer of pre-primitive streak stage chick embryos reveals expression of Apolipoprotein A1 in hypoblast, endoblast and endoderm

(2008) Federica Bertocchini et al.   GENE EXPRESSION PATTERNS