Manually curated genome-scale reconstruction of the metabolic network of Bacillus megaterium DSM319

Constraint-based modeling in microbial food biotechnology

(2018) Martin H. Rau et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

Biochemical and structural characterization of CYP109A2, a vitamin D3 25-hydroxylase from Bacillus megaterium

(2017) Ammar Abdulmughni et al.   FEBS Journal

Discovery of a widespread prokaryotic 5-oxoprolinase that was hiding in plain sight

(2017) Thomas D. Niehaus et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Engineering Bacillus megaterium for production of functional intracellular materials

(2017) Katrin Grage et al.   Microbial Cell Factories

Simulation of Escherichia coli Dynamics in Biofilms and Submerged Colonies with an Individual-Based Model Including Metabolic Network Information

(2017) Ignace L. M. M. Tack et al.   Frontiers in Microbiology

Structural studies of domain movement in active-site mutants of porphobilinogen deaminase from Bacillus megaterium

(2017) Jingxu Guo et al.   Acta Crystallographica Section F-Structural Biology Communications

Genome-scale metabolic modeling and in silico analysis of lipid accumulating yeastCandida tropicalisfor dicarboxylic acid production

(2016) Pranjul Mishra et al.   BIOTECHNOLOGY AND BIOENGINEERING

Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center

(2016) Alice R. Wattam et al.   NUCLEIC ACIDS RESEARCH

UniProt: the universal protein knowledgebase

(2016)   NUCLEIC ACIDS RESEARCH

Construction and analysis of a genome-scale metabolic network for Bacillus licheniformis WX-02

(2016) Jing Guo et al.   RESEARCH IN MICROBIOLOGY

Enhancement of simultaneous gold and copper recovery from discarded mobile phone PCBs using Bacillus megaterium : RSM based optimization of effective factors and evaluation of their interactions

(2016) M. Arshadi et al.   WASTE MANAGEMENT

Studies on the production of shikimic acid using the aroK knockout strain of Bacillus megaterium

(2016) Saptarshi Ghosh et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

Sucrose and ABA regulate starch biosynthesis in maize through a novel transcription factor, ZmEREB156

(2016) Huanhuan Huang et al.   Scientific Reports

Using Genome-scale Models to Predict Biological Capabilities

(2015) Edward J. O’Brien et al.   CELL

Genome-scale reconstruction of the metabolic network in Pseudomonas stutzeri A1501

(2015) Parizad Babaei et al.   Molecular BioSystems

Constraint-based models predict metabolic and associated cellular functions

(2014) Aarash Bordbar et al.   NATURE REVIEWS GENETICS

Towards a cell factory for vitamin B12 production in Bacillus megaterium: bypassing of the cobalamin riboswitch control elements

(2014) Simon J. Moore et al.   New Biotechnology

Siderophore Production by Bacillus megaterium: Effect of Growth Phase and Cultural Conditions

(2013) Sofia Santos et al.   APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY

Valorization of glycerol through the production of biopolymers: The PHB case using Bacillus megaterium

(2013) Javier M. Naranjo et al.   BIORESOURCE TECHNOLOGY

Reconstruction and analysis of the industrial strain Bacillus megaterium WSH002 genome-scale in silico metabolic model

(2013) Wei Zou et al.   JOURNAL OF BIOTECHNOLOGY

In silico metabolic engineering of Bacillus subtilis for improved production of riboflavin, Egl-237, (R,R)-2,3-butanediol and isobutanol

(2013) Tong Hao et al.   Molecular BioSystems

Genome Sequences of the Biotechnologically Important Bacillus megaterium Strains QM B1551 and DSM319

(2011) M. Eppinger et al.   JOURNAL OF BACTERIOLOGY

Reconciliation of Genome-Scale Metabolic Reconstructions for Comparative Systems Analysis

(2011) Matthew A. Oberhardt et al.   PLoS Computational Biology

The biomass objective function

(2010) Adam M Feist et al.   CURRENT OPINION IN MICROBIOLOGY

progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement

(2010) Aaron E. Darling et al.   PLoS One

Prediction of metabolic fluxes by incorporating genomic context and flux-converging pattern analyses

(2010) J. M. Park et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Flux-sum analysis: a metabolite-centric approach for understanding the metabolic network

(2009) Bevan Chung et al.   BMC Systems Biology

iBsu1103: a new genome-scale metabolic model of Bacillus subtilis based on SEED annotations

(2009) Christopher S Henry et al.   GENOME BIOLOGY

Expanded flux variability analysis on metabolic network of Escherichia coli

(2009) Tong Chen et al.   Science Bulletin

Genome-Scale Metabolic Network Analysis of the Opportunistic Pathogen Pseudomonas aeruginosa PAO1

(2008) M. A. Oberhardt et al.   JOURNAL OF BACTERIOLOGY

Genome-Scale Reconstruction and Analysis of the Pseudomonas putida KT2440 Metabolic Network Facilitates Applications in Biotechnology

(2008) Jacek Puchałka et al.   PLoS Computational Biology

Comparison of Bacillus monooxygenase genes for unique fatty acid production

(2007) B.L. Hilker et al.   PROGRESS IN LIPID RESEARCH