Recording mobile DNA in the gut microbiota using an Escherichia coli CRISPR-Cas spacer acquisition platform
出版年份 2020 全文链接
标题
Recording mobile DNA in the gut microbiota using an Escherichia coli CRISPR-Cas spacer acquisition platform
作者
关键词
-
出版物
Nature Communications
Volume 11, Issue 1, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2020-01-07
DOI
10.1038/s41467-019-14012-5
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Quantifying spatiotemporal variability and noise in absolute microbiota abundances using replicate sampling
- (2019) Brian W. Ji et al. NATURE METHODS
- Transcriptional recording by CRISPR spacer acquisition from RNA
- (2018) Florian Schmidt et al. NATURE
- Multiplex recording of cellular events over time on CRISPR biological tape
- (2017) Ravi U. Sheth et al. SCIENCE
- Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads
- (2017) Ryan R. Wick et al. PLoS Computational Biology
- Genome Dynamics of Escherichia coli during Antibiotic Treatment: Transfer, Loss, and Persistence of Genetic Elements In situ of the Infant Gut
- (2017) Andreas Porse et al. Frontiers in Cellular and Infection Microbiology
- Transfer and Persistence of a Multi-Drug Resistance Plasmid in situ of the Infant Gut Microbiota in the Absence of Antibiotic Treatment
- (2017) Heidi Gumpert et al. Frontiers in Microbiology
- Adaptation in CRISPR-Cas Systems
- (2016) Samuel H. Sternberg et al. MOLECULAR CELL
- Mobile genes in the human microbiome are structured from global to individual scales
- (2016) I. L. Brito et al. NATURE
- Molecular recordings by directed CRISPR spacer acquisition
- (2016) Seth L. Shipman et al. SCIENCE
- CRISPR adaptation biases explain preference for acquisition of foreign DNA
- (2015) Asaf Levy et al. NATURE
- Inferring Horizontal Gene Transfer
- (2015) Matt Ravenhall et al. PLoS Computational Biology
- Inexpensive Multiplexed Library Preparation for Megabase-Sized Genomes
- (2015) Michael Baym et al. PLoS One
- In SilicoDetection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing
- (2014) Alessandra Carattoli et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- Evidence of Extensive DNA Transfer between Bacteroidales Species within the Human Gut
- (2014) M. J. Coyne et al. mBio
- CRISPR-Mediated Adaptive Immune Systems in Bacteria and Archaea
- (2013) Rotem Sorek et al. Annual Review of Biochemistry
- Shiga Toxin 2-Encoding Bacteriophages in Human Fecal Samples from Healthy Individuals
- (2013) A. Martinez-Castillo et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform
- (2013) James J. Kozich et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- The role of the natural environment in the emergence of antibiotic resistance in Gram-negative bacteria
- (2013) Elizabeth MH Wellington et al. LANCET INFECTIOUS DISEASES
- CRISPR-spacer integration reporter plasmids reveal distinct genuine acquisition specificities among CRISPR-Cas I-E variants ofEscherichia coli
- (2013) César Díez-Villaseñor et al. RNA Biology
- Strong bias in the bacterial CRISPR elements that confer immunity to phage
- (2013) David Paez-Espino et al. Nature Communications
- Identification of acquired antimicrobial resistance genes
- (2012) E. Zankari et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
- (2012) Anton Bankevich et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- Proteins and DNA elements essential for the CRISPR adaptation process in Escherichia coli
- (2012) Ido Yosef et al. NUCLEIC ACIDS RESEARCH
- Molecular memory of prior infections activates the CRISPR/Cas adaptive bacterial immunity system
- (2012) Kirill A. Datsenko et al. Nature Communications
- Competition Between Conjugation and M13 Phage Infection in Escherichia coli in the Absence of Selection Pressure: A Kinetic Study
- (2012) Zhenmao Wan et al. G3-Genes Genomes Genetics
- CRISPR Distribution within the Escherichia coli Species Is Not Suggestive of Immunity-Associated Diversifying Selection
- (2011) M. Touchon et al. JOURNAL OF BACTERIOLOGY
- Ecology drives a global network of gene exchange connecting the human microbiome
- (2011) Chris S. Smillie et al. NATURE
- Search and clustering orders of magnitude faster than BLAST
- (2010) Robert C. Edgar BIOINFORMATICS
- Silent Mischief: Bacteriophage Mu Insertions Contaminate Products of Escherichia coli Random Mutagenesis Performed Using Suicidal Transposon Delivery Plasmids Mobilized by Broad-Host-Range RP4 Conjugative Machinery
- (2010) L. Ferrieres et al. JOURNAL OF BACTERIOLOGY
- Transfer of carbohydrate-active enzymes from marine bacteria to Japanese gut microbiota
- (2010) Jan-Hendrik Hehemann et al. NATURE
- The population genetics of commensal Escherichia coli
- (2010) Olivier Tenaillon et al. NATURE REVIEWS MICROBIOLOGY
- Estimating the size of the bacterial pan-genome
- (2009) Pascal Lapierre et al. TRENDS IN GENETICS
- The Pangenome Structure of Escherichia coli: Comparative Genomic Analysis of E. coli Commensal and Pathogenic Isolates
- (2008) D. A. Rasko et al. JOURNAL OF BACTERIOLOGY
- Small CRISPR RNAs Guide Antiviral Defense in Prokaryotes
- (2008) S. J. J. Brouns et al. SCIENCE
- CRISPR Interference Limits Horizontal Gene Transfer in Staphylococci by Targeting DNA
- (2008) Luciano A. Marraffini et al. SCIENCE
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