Global shape of Toll activation is determined by wntD enhancer properties

Dynamics of Spaetzle morphogen shuttling in the Drosophila embryo shapes gastrulation patterning

(2019) Neta Rahimi et al.   DEVELOPMENT

Phospho-regulation of ATOH1 Is Required for Plasticity of Secretory Progenitors and Tissue Regeneration

(2018) Goran Tomic et al.   Cell Stem Cell

An information theoretic treatment of sequence-to-expression modeling

(2018) Farzaneh Khajouei et al.   PLoS Computational Biology

A WntD-Dependent Integral Feedback Loop Attenuates Variability in Drosophila Toll Signaling

(2016) Neta Rahimi et al.   DEVELOPMENTAL CELL

Single molecule approaches for quantifying transcription and degradation rates in intact mammalian tissues

(2016) Keren Bahar Halpern et al.   METHODS

Pentagone internalises glypicans to fine-tune multiple signalling pathways

(2016) Mark Norman et al.   eLife

Kinetics of gene derepression by ERK signaling

(2013) B. Lim et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Self-Organized Shuttling: Generating Sharp Dorsoventral Polarity in the Early Drosophila Embryo

(2012) Michal Haskel-Ittah et al.   CELL

RTK signaling modulates the Dorsal gradient

(2012) A. Helman et al.   DEVELOPMENT

Expansion-Repression Mechanism for Scaling the Dpp Activation Gradient in Drosophila Wing Imaginal Discs

(2011) Danny Ben-Zvi et al.   CURRENT BIOLOGY

Gene Regulation by MAPK Substrate Competition

(2011) Yoosik Kim et al.   DEVELOPMENTAL CELL

Dpp Signaling Activity Requires Pentagone to Scale with Tissue Size in the Growing Drosophila Wing Imaginal Disc

(2011) Fisun Hamaratoglu et al.   PLOS BIOLOGY

The role of chromatin accessibility in directing the widespread, overlapping patterns of Drosophila transcription factor binding

(2011) Xiao-Yong Li et al.   GENOME BIOLOGY

Control of Dpp morphogen signalling by a secreted feedback regulator

(2010) Robin Vuilleumier et al.   NATURE CELL BIOLOGY

FlyFactorSurvey: a database of Drosophila transcription factor binding specificities determined using the bacterial one-hybrid system

(2010) Lihua Julie Zhu et al.   NUCLEIC ACIDS RESEARCH

Scaling of morphogen gradients by an expansion-repression integral feedback control

(2010) D. Ben-Zvi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Thermodynamics-Based Models of Transcriptional Regulation by Enhancers: The Roles of Synergistic Activation, Cooperative Binding and Short-Range Repression

(2010) Xin He et al.   PLoS Computational Biology