Extensive survey of the ycf4 plastid gene throughout the IRLC legumes: Robust evidence of its locus and lineage specific accelerated rate of evolution, pseudogenization and gene loss in the tribe Fabeae

EasyCodeML: A visual tool for analysis of selection using CodeML

(2019) Fangluan Gao et al.   Ecology and Evolution

Plastid genome evolution in tribe Desmodieae (Fabaceae: Papilionoideae)

(2019) Dong-Pil Jin et al.   PLoS One

The Callerya Group redefined and Tribe Wisterieae (Fabaceae) emended based on morphology and data from nuclear and chloroplast DNA sequences

(2019) James A. Compton et al.   PhytoKeys

Comparative Plastid Genomes of Primula Species: Sequence Divergence and Phylogenetic Relationships

(2018) Ting Ren et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Sequencing, Characterization, and Comparative Analyses of the Plastome of Caragana rosea var. rosea

(2018) Mei Jiang et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

The photosystem I assembly apparatus consisting of Ycf3–Y3IP1 and Ycf4 modules

(2018) Sreedhar Nellaepalli et al.   Nature Communications

A novel inversion in the chloroplast genome of marama (Tylosema esculentum)

(2017) Yunsoo Kim et al.   JOURNAL OF EXPERIMENTAL BOTANY

A new subfamily classification of the Leguminosae based on a taxonomically comprehensive phylogeny – The Legume Phylogeny Working Group (LPWG)

(2017) Nasim Azani et al.   TAXON

Extensive gain and loss of photosystem I subunits in chromerid algae, photosynthetic relatives of apicomplexans

(2017) Roman Sobotka et al.   Scientific Reports

Phylogeny and divergence times of the Coluteoid clade with special reference to Colutea (Fabaceae) inferred from nrDNA ITS and two cpDNAs, matK and rpl32-trnL(UAG) sequences data

(2016) M. Moghaddam et al.   PLANT BIOSYSTEMS

A molecular phylogeny of Caraganeae (Leguminosae, Papilionoideae) reveals insights into new generic and infrageneric delimitations

(2016) Lei Duan et al.   PhytoKeys

Plastid genome sequences of legumes reveal parallel inversions and multiple losses ofrps16in papilionoids

(2015) Erika N. Schwarz et al.   Journal of Systematics and Evolution

In Depth Characterization of Repetitive DNA in 23 Plant Genomes Reveals Sources of Genome Size Variation in the Legume Tribe Fabeae

(2015) Jiří Macas et al.   PLoS One

Evolutionary origin of highly repetitive plastid genomes within the clover genus (Trifolium)

(2014) Saemundur Sveinsson et al.   BMC EVOLUTIONARY BIOLOGY

Evolutionary and biotechnology implications of plastid genome variation in the inverted-repeat-lacking clade of legumes

(2014) Jamal Sabir et al.   PLANT BIOTECHNOLOGY JOURNAL

Molecular Phylogeny of the Genus Lathyrus (Fabaceae-Fabeae) Based on cpDNA matK Sequence in Iran

(2014) Roghayeh Oskoueiyan et al.   Iranian Journal of Biotechnology

Towards a new classification of Leguminosae: Naming clades using non-Linnaean phylogenetic nomenclature

(2013) Martin F. Wojciechowski   SOUTH AFRICAN JOURNAL OF BOTANY

Systematics, biogeography, and character evolution of the legume tribe Fabeae with special focus on the middle-Atlantic island lineages

(2012) Hanno Schaefer et al.   BMC EVOLUTIONARY BIOLOGY

The Plastid Genome-Encoded Ycf4 Protein Functions as a Nonessential Assembly Factor for Photosystem I in Higher Plants

(2012) K. Krech et al.   PLANT PHYSIOLOGY

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

The evolution of the plastid chromosome in land plants: gene content, gene order, gene function

(2011) Susann Wicke et al.   PLANT MOLECULAR BIOLOGY

JCoDA: a tool for detecting evolutionary selection

(2010) Steven N Steinway et al.   BMC BIOINFORMATICS

Localized hypermutation and associated gene losses in legume chloroplast genomes

(2010) A. M. Magee et al.   GENOME RESEARCH

Extreme Reconfiguration of Plastid Genomes in the Angiosperm Family Geraniaceae: Rearrangements, Repeats, and Codon Usage

(2010) M. M. Guisinger et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Functional Transfer of Genes From the Mitochondria to the Nucleus: The Effects of Selection, Mutation, Population Size and Rate of Self-Fertilization

(2009) Yaniv Brandvain et al.   GENETICS

Biochemical and Structural Studies of the Large Ycf4-Photosystem I Assembly Complex of the Green Alga Chlamydomonas reinhardtii

(2009) S.-i. Ozawa et al.   PLANT CELL

Extensive Reorganization of the Plastid Genome of Trifolium subterraneum (Fabaceae) Is Associated with Numerous Repeated Sequences and Novel DNA Insertions

(2008) Zhengqiu Cai et al.   JOURNAL OF MOLECULAR EVOLUTION

Complete plastid genome sequence of the chickpea (Cicer arietinum) and the phylogenetic distribution of rps12 and clpP intron losses among legumes (Leguminosae)

(2008) Robert K. Jansen et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Phylogeny-Aware Gap Placement Prevents Errors in Sequence Alignment and Evolutionary Analysis

(2008) A. Loytynoja et al.   SCIENCE

Hypermutability of Damaged Single-Strand DNA Formed at Double-Strand Breaks and Uncapped Telomeres in Yeast Saccharomyces cerevisiae

(2008) Yong Yang et al.   PLoS Genetics