Genomic processes underlying rapid adaptation of a natural Chironomus riparius population to unintendedly applied experimental selection pressures

Establishing laboratory cultures and performing ecological and evolutionary experiments with the emerging model species Chironomus riparius

(2019) Quentin Foucault et al.   JOURNAL OF APPLIED ENTOMOLOGY

Genetic redundancy fuels polygenic adaptation in Drosophila

(2019) Neda Barghi et al.   PLOS BIOLOGY

Modelling seasonal dynamics, population stability, and pest control in Aedes japonicus japonicus (Diptera: Culicidae)

(2019) Andreas Wieser et al.   Parasites & Vectors

The genomic footprint of climate adaptation in Chironomus riparius

(2018) Ann-Marie Waldvogel et al.   MOLECULAR ECOLOGY

Genomic signatures of experimental adaptive radiation in Drosophila

(2018) Pawel Michalak et al.   MOLECULAR ECOLOGY

Contingency and determinism in evolution: Replaying life’s tape

(2018) Zachary D. Blount et al.   SCIENCE

Rapid adaptation to high temperatures in Chironomus riparius

(2018) Quentin Foucault et al.   Ecology and Evolution

Quantifying Selection with Pool-Seq Time Series Data

(2017) Thomas Taus et al.   MOLECULAR BIOLOGY AND EVOLUTION

Modes of Rapid Polygenic Adaptation

(2017) Kavita Jain et al.   MOLECULAR BIOLOGY AND EVOLUTION

Biodiversity redistribution under climate change: Impacts on ecosystems and human well-being

(2017) Gretta T. Pecl et al.   SCIENCE

Toxicological perspective on the osmoregulation and ionoregulation physiology of major ions by freshwater animals: Teleost fish, crustacea, aquatic insects, and Mollusca

(2016) Michael B. Griffith   ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY

Uncovering the genetic signature of quantitative trait evolution with replicated time series data

(2016) S U Franssen et al.   HEREDITY

Reconstruction of Haplotype-Blocks Selected during Experimental Evolution

(2016) Susanne U. Franssen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genetic basis for variation in salinity tolerance between stickleback ecotypes

(2016) Makoto Kusakabe et al.   MOLECULAR ECOLOGY

Support for the evolutionary speed hypothesis from intraspecific population genetic data in the non-biting midgeChironomus riparius

(2016) Ann-Marie Oppold et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Can Population Genetics Adapt to Rapid Evolution?

(2016) Philipp W. Messer et al.   TRENDS IN GENETICS

Rapid evolution of metabolic traits explains thermal adaptation in phytoplankton

(2015) Daniel Padfield et al.   ECOLOGY LETTERS

Power Analysis of Artificial Selection Experiments Using Efficient Whole Genome Simulation of Quantitative Traits

(2015) Darren Kessner et al.   GENETICS

The environmental genomics of metazoan thermal adaptation

(2015) D Porcelli et al.   HEREDITY

Signatures of positive selection: from selective sweeps at individual loci to subtle allele frequency changes in polygenic adaptation

(2015) Wolfgang Stephan   MOLECULAR ECOLOGY

Unique evolutionary trajectories in repeated adaptation to hydrogen sulphide-toxic habitats of a neotropical fish (Poecilia mexicana)

(2015) Markus Pfenninger et al.   MOLECULAR ECOLOGY

Contemporary evolution during invasion: evidence for differentiation, natural selection, and local adaptation

(2015) Robert I. Colautti et al.   MOLECULAR ECOLOGY

Elucidating the molecular architecture of adaptation via evolve and resequence experiments

(2015) Anthony Long et al.   NATURE REVIEWS GENETICS

Tracing the evolutionary origins of insect renal function

(2015) Kenneth A. Halberg et al.   Nature Communications

Power Analysis of Artificial Selection Experiments Using Efficient Whole Genome Simulation of Quantitative Traits

(2015) Darren Kessner et al.   GENETICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Combining experimental evolution with next-generation sequencing: a powerful tool to study adaptation from standing genetic variation

(2014) C Schlötterer et al.   HEREDITY

The Power to Detect Quantitative Trait Loci Using Resequenced, Experimentally Evolved Populations of Diploid, Sexual Organisms

(2014) James G. Baldwin-Brown et al.   MOLECULAR BIOLOGY AND EVOLUTION

Empirical fitness landscapes and the predictability of evolution

(2014) J. Arjan G.M. de Visser et al.   NATURE REVIEWS GENETICS

Global variation in thermal tolerances and vulnerability of endotherms to climate change

(2014) I. Khaliq et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Functional and genomic context in pathway analysis of GWAS data

(2014) Michael A. Mooney et al.   TRENDS IN GENETICS

‘Pitfalls in the application of gene set analysis to genetics studies’: a response

(2014) Michael A. Mooney et al.   TRENDS IN GENETICS

Gene expression responses of threespine stickleback to salinity: implications for salt-sensitive hypertension

(2014) Gang Wang et al.   Frontiers in Genetics

Massive Habitat-Specific Genomic Response in D. melanogaster Populations during Experimental Evolution in Hot and Cold Environments

(2013) Ray Tobler et al.   MOLECULAR BIOLOGY AND EVOLUTION

Transcriptome Analysis of Portunus trituberculatus in Response to Salinity Stress Provides Insights into the Molecular Basis of Osmoregulation

(2013) Jianjian Lv et al.   PLoS One

Gowinda: unbiased analysis of gene set enrichment for genome-wide association studies

(2012) R. Kofler et al.   BIOINFORMATICS

Lethal and sublethal behavioural responses of saline water beetles to acute heat and osmotic stress

(2012) SUSANA PALLARÉS et al.   ECOLOGICAL ENTOMOLOGY

The evolution of salinity tolerance inDaphnia: a functional genomics approach

(2012) Leigh C. Latta et al.   ECOLOGY LETTERS

The impact of global climate change on genetic diversity within populations and species

(2012) Steffen U. Pauls et al.   MOLECULAR ECOLOGY

Evolutionary determinants of population differences in population growth rate × habitat temperature interactions in Chironomus riparius

(2012) Sabrina Nemec et al.   OECOLOGIA

The Molecular Diversity of Adaptive Convergence

(2012) O. Tenaillon et al.   SCIENCE

PoPoolation2: identifying differentiation between populations using sequencing of pooled DNA samples (Pool-Seq)

(2011) R. Kofler et al.   BIOINFORMATICS

PoPoolation: A Toolbox for Population Genetic Analysis of Next Generation Sequencing Data from Pooled Individuals

(2011) Robert Kofler et al.   PLoS One

Genome-wide analysis of a long-term evolution experiment with Drosophila

(2010) Molly K. Burke et al.   NATURE

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Temperature-dependent effects of road deicing salt on chironomid larvae

(2009) Pamela Silver et al.   WETLANDS

Pervasive Natural Selection in the Drosophila Genome?

(2009) Guy Sella et al.   PLoS Genetics

Reproductive Isolation and Ecological Niche Partition among Larvae of the Morphologically Cryptic Sister Species Chironomus riparius and C. piger

(2008) Markus Pfenninger et al.   PLoS One