A benchmark of gene expression tissue-specificity metrics

Rapid divergence and diversification of mammalian duplicate gene functions

(2015) Raquel Assis et al.   BMC EVOLUTIONARY BIOLOGY

Lineage-specific sequence evolution and exon edge conservation partially explain the relationship between evolutionary rate and expression level inA. thaliana

(2015) Stephen J. Bush et al.   MOLECULAR ECOLOGY

Evolutionary analysis of the female-specific avian W chromosome

(2015) Linnéa Smeds et al.   Nature Communications

Parallel Gene Expression Differences between Low and High Latitude Populations of Drosophila melanogaster and D. simulans

(2015) Li Zhao et al.   PLoS Genetics

Tissue-Specific Evolution of Protein Coding Genes in Human and Mouse

(2015) Nadezda Kryuchkova-Mostacci et al.   PLoS One

IQRray, a new method for Affymetrix microarray quality control, and the homologous organ conservation score, a new benchmark method for quality control metrics

(2014) Marta Rosikiewicz et al.   BIOINFORMATICS

Translational selection in human: more pronounced in housekeeping genes

(2014) Lina Ma et al.   Biology Direct

Origins and functional evolution of Y chromosomes across mammals

(2014) Diego Cortez et al.   NATURE

The concordance between RNA-seq and microarray data depends on chemical treatment and transcript abundance

(2014) Charles Wang et al.   NATURE BIOTECHNOLOGY

Comparison of RNA-Seq and Microarray in Transcriptome Profiling of Activated T Cells

(2014) Shanrong Zhao et al.   PLoS One

Comparison of the transcriptional landscapes between human and mouse tissues

(2014) Shin Lin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Analysis of the Human Tissue-specific Expression by Genome-wide Integration of Transcriptomics and Antibody-based Proteomics

(2013) Linn Fagerberg et al.   MOLECULAR & CELLULAR PROTEOMICS

Conserved Proteins Are Fragile

(2013) Raquel Assis et al.   MOLECULAR BIOLOGY AND EVOLUTION

Neofunctionalization of young duplicate genes in Drosophila

(2013) R. Assis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A model based criterion for gene expression calls using RNA-seq data

(2013) Günter P. Wagner et al.   THEORY IN BIOSCIENCES

Correcting for the bias due to expression specificity improves the estimation of constrained evolution of expression between mouse and human

(2012) Barbara Piasecka et al.   BIOINFORMATICS

Tissue specificity of genetic regulation of gene expression

(2012) Harald H H Göring   NATURE GENETICS

The Use of EST Expression Matrixes for the Quality Control of Gene Expression Data

(2012) Andrew T. Milnthorpe et al.   PLoS One

Mechanisms and Evolutionary Patterns of Mammalian and Avian Dosage Compensation

(2012) Philippe Julien et al.   PLOS BIOLOGY

The Transcript-centric Mutations in Human Genomes

(2012) Peng Cui et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

RNA sequencing reveals two major classes of gene expression levels in metazoan cells

(2011) D. Hebenstreit et al.   Molecular Systems Biology

The evolution of gene expression levels in mammalian organs

(2011) David Brawand et al.   NATURE

REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms

(2011) Fran Supek et al.   PLoS One

A User's Guide to the Encyclopedia of DNA Elements (ENCODE)

(2011)   PLOS BIOLOGY

Support for multiple classes of local expression clusters in Drosophila melanogaster, but no evidence for gene order conservation

(2011) Claudia C Weber et al.   GENOME BIOLOGY

TiSGeD: a database for tissue-specific genes

(2010) S. J. Xiao et al.   BIOINFORMATICS

Expression breadth and expression abundance behave differently in correlations with evolutionary rates

(2010) Seung Park et al.   BMC EVOLUTIONARY BIOLOGY

Comparison and consolidation of microarray data sets of human tissue expression

(2010) Jenny Russ et al.   BMC GENOMICS

GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists

(2009) Eran Eden et al.   BMC BIOINFORMATICS

A Problem With the Correlation Coefficient as a Measure of Gene Expression Divergence

(2009) Vini Pereira et al.   GENETICS

Modeling tissue-specific structural patterns in human and mouse promoters

(2009) Alexis Vandenbon et al.   NUCLEIC ACIDS RESEARCH

An Abundance of Ubiquitously Expressed Genes Revealed by Tissue Transcriptome Sequence Data

(2009) Daniel Ramsköld et al.   PLoS Computational Biology

TiGER: a database for tissue-specific gene expression and regulation

(2008) Xiong Liu et al.   BMC BIOINFORMATICS

A comprehensive functional analysis of tissue specificity of human gene expression

(2008) Zoltan Dezso et al.   BMC BIOLOGY

Characterization of paralogous protein families in rice

(2008) Haining Lin et al.   BMC PLANT BIOLOGY

Using Ribosomal Protein Genes as Reference: A Tale of Caution

(2008) Lieven Thorrez et al.   PLoS One