On the Matrix Condition of Phylogenetic Tree

Phylogenetic comparative methods on phylogenetic networks with reticulations

(2018) Paul Bastide et al.   SYSTEMATIC BIOLOGY

PhyloNetworks: A Package for Phylogenetic Networks

(2017) Claudia Solís-Lemus et al.   MOLECULAR BIOLOGY AND EVOLUTION

Multivariate Phylogenetic Comparative Methods: Evaluations, Comparisons, and Recommendations

(2017) Dean C. Adams et al.   SYSTEMATIC BIOLOGY

rotl: an R package to interact with the Open Tree of Life data

(2016) François Michonneau et al.   Methods in Ecology and Evolution

Rphylopars: fast multivariate phylogenetic comparative methods for missing data and within-species variation

(2016) Eric W. Goolsby et al.   Methods in Ecology and Evolution

Assessing phenotypic correlation through the multivariate phylogenetic latent liability model

(2015) Gabriela B. Cybis et al.   Annals of Applied Statistics

A cautionary note on the use of Ornstein Uhlenbeck models in macroevolutionary studies

(2015) Natalie Cooper et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Tree of Life Reveals Clock-Like Speciation and Diversification

(2015) S. Blair Hedges et al.   MOLECULAR BIOLOGY AND EVOLUTION

Synthesis of phylogeny and taxonomy into a comprehensive tree of life

(2015) Cody E. Hinchliff et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

mvmorph: anrpackage for fitting multivariate evolutionary models to morphometric data

(2015) Julien Clavel et al.   Methods in Ecology and Evolution

MCMC Methods for Multi-Response Generalized Linear Mixed Models: TheMCMCglmmRPackage

(2015) Jarrod D. Hadfield   Journal of Statistical Software

Monte Carlo algorithms for Brownian phylogenetic models

(2014) B. Horvilleur et al.   BIOINFORMATICS

A Linear-Time Algorithm for Gaussian and Non-Gaussian Trait Evolution Models

(2014) Lam si Tung Ho et al.   SYSTEMATIC BIOLOGY

Phylotastic! Making tree-of-life knowledge accessible, reusable and convenient

(2013) Arlin Stoltzfus et al.   BMC BIOINFORMATICS

Assessing the Goodness of Fit of Phylogenetic Comparative Methods: A Meta-Analysis and Simulation Study

(2013) Dwueng-Chwuan Jhwueng   PLoS One

SURFACE: detecting convergent evolution from comparative data by fitting Ornstein-Uhlenbeck models with stepwise Akaike Information Criterion

(2013) Travis Ingram et al.   Methods in Ecology and Evolution

MODELING STABILIZING SELECTION: EXPANDING THE ORNSTEIN-UHLENBECK MODEL OF ADAPTIVE EVOLUTION

(2012) Jeremy M. Beaulieu et al.   EVOLUTION

Unifying the spatial epidemiology and molecular evolution of emerging epidemics

(2012) O. G. Pybus et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Diversitree: comparative phylogenetic analyses of diversification in R

(2012) Richard G. FitzJohn   Methods in Ecology and Evolution

Fast likelihood calculations for comparative analyses

(2012) Robert P. Freckleton   Methods in Ecology and Evolution

Simulating Trees with a Fixed Number of Extant Species

(2011) Tanja Stadler   SYSTEMATIC BIOLOGY

phangorn: phylogenetic analysis in R

(2010) Klaus Peter Schliep   BIOINFORMATICS

General quantitative genetic methods for comparative biology: phylogenies, taxonomies and multi-trait models for continuous and categorical characters

(2010) J. D. HADFIELD et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

On incomplete sampling under birth–death models and connections to the sampling-based coalescent

(2009) Tanja Stadler   JOURNAL OF THEORETICAL BIOLOGY