Spatiotemporal modeling of microbial metabolism

Metabolic modeling of synthesis gas fermentation in bubble column reactors

(2015) Jin Chen et al.   Biotechnology for Biofuels

Spatially-resolved metabolic cooperativity within dense bacterial colonies

(2015) John A Cole et al.   BMC Systems Biology

An algorithm for the reduction of genome-scale metabolic network models to meaningful core models

(2015) Philipp Erdrich et al.   BMC Systems Biology

Species interactions differ in their genetic robustness

(2015) Lon M. Chubiz et al.   Frontiers in Microbiology

Metabolic modeling of spatial heterogeneity of biofilms in microbial fuel cells reveals substrate limitations in electrical current generation

(2014) Nadeera Jayasinghe et al.   Biotechnology Journal

DFBAlab: a fast and reliable MATLAB code for dynamic flux balance analysis

(2014) Jose A Gomez et al.   BMC BIOINFORMATICS

Kinetic Studies on Fermentative Production of Biofuel from Synthesis Gas UsingClostridium ljungdahlii

(2014) Maedeh Mohammadi et al.   TheScientificWorldJOURNAL

Interactions in multispecies biofilms: do they actually matter?

(2014) Mette Burmølle et al.   TRENDS IN MICROBIOLOGY

Metabolic Resource Allocation in Individual Microbes Determines Ecosystem Interactions and Spatial Dynamics

(2014) William R. Harcombe et al.   Cell Reports

Dynamic metabolic modeling of a microaerobic yeast co-culture: predicting and optimizing ethanol production from glucose/xylose mixtures

(2013) Timothy J Hanly et al.   Biotechnology for Biofuels

Characterizing acetogenic metabolism using a genome-scale metabolic reconstruction of Clostridium ljungdahlii

(2013) Harish Nagarajan et al.   Microbial Cell Factories

Novel Multiscale Modeling Tool Applied to Pseudomonas aeruginosa Biofilm Formation

(2013) Matthew B. Biggs et al.   PLoS One

A reliable simulator for dynamic flux balance analysis

(2012) K. Höffner et al.   BIOTECHNOLOGY AND BIOENGINEERING

Commercial Biomass Syngas Fermentation

(2012) James Daniell et al.   Energies

Development and application of a polymicrobial, in vitro, wound biofilm model

(2012) J. Woods et al.   JOURNAL OF APPLIED MICROBIOLOGY

Oxygen gradients in the microcirculation

(2011) R. N. Pittman   Acta Physiologica

Dynamic flux balance modeling of S. cerevisiae and E. coli co-cultures for efficient consumption of glucose/xylose mixtures

(2011) Timothy J. Hanly et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Biomass-derived syngas fermentation into biofuels: Opportunities and challenges

(2010) Pradeep Chaminda Munasinghe et al.   BIORESOURCE TECHNOLOGY

Dynamic flux balance modeling of microbial co-cultures for efficient batch fermentation of glucose and xylose mixtures

(2010) Timothy J. Hanly et al.   BIOTECHNOLOGY AND BIOENGINEERING

Physiology of Pseudomonas aeruginosa in biofilms as revealed by transcriptome analysis

(2010) James P Folsom et al.   BMC MICROBIOLOGY

Direct coupling of a genome-scale microbial in silico model and a groundwater reactive transport model

(2010) Yilin Fang et al.   JOURNAL OF CONTAMINANT HYDROLOGY

Biomass gasification: Still promising? A 30-year global overview

(2010) Arjan F. Kirkels et al.   RENEWABLE & SUSTAINABLE ENERGY REVIEWS

Steady-state and dynamic flux balance analysis of ethanol production by Saccharomyces cerevisiae

(2009) J.L. Hjersted et al.   IET Systems Biology

Genome-Scale Metabolic Network Analysis of the Opportunistic Pathogen Pseudomonas aeruginosa PAO1

(2008) M. A. Oberhardt et al.   JOURNAL OF BACTERIOLOGY

Biofilms in chronic wounds

(2008) Garth A. James et al.   WOUND REPAIR AND REGENERATION