标题
Cross-species Conservation of context-specific networks
作者
关键词
ENCODE, Gene regulatory networks (GRN), Cross-species transfer, Cytoscape, Web application, Software
出版物
BMC Systems Biology
Volume 10, Issue 1, Pages -
出版商
Springer Nature
发表日期
2016-08-17
DOI
10.1186/s12918-016-0304-1
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Diffany: an ontology-driven framework to infer, visualise and analyse differential molecular networks
- (2016) Sofie Van Landeghem et al. BMC BIOINFORMATICS
- Integrative analysis of 111 reference human epigenomes
- (2015) Anshul Kundaje et al. NATURE
- Understanding multicellular function and disease with human tissue-specific networks
- (2015) Casey S Greene et al. NATURE GENETICS
- KEGG as a reference resource for gene and protein annotation
- (2015) Minoru Kanehisa et al. NUCLEIC ACIDS RESEARCH
- NDEx, the Network Data Exchange
- (2015) Dexter Pratt et al. Cell Systems
- Principles of regulatory information conservation between mouse and human
- (2014) Yong Cheng et al. NATURE
- HOMECAT: consensus homologs mapping for interspecific knowledge transfer and functional genomic data integration
- (2013) Simone Zorzan et al. BIOINFORMATICS
- JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profiles
- (2013) Anthony Mathelier et al. NUCLEIC ACIDS RESEARCH
- Ensembl 2014
- (2013) Paul Flicek et al. NUCLEIC ACIDS RESEARCH
- The Potential of Text Mining in Data Integration and Network Biology for Plant Research: A Case Study on Arabidopsis
- (2013) S. Van Landeghem et al. PLANT CELL
- Complementing the Eukaryotic Protein Interactome
- (2013) Robert Pesch et al. PLoS One
- Circuitry and Dynamics of Human Transcription Factor Regulatory Networks
- (2012) Shane Neph et al. CELL
- Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors
- (2012) J. Wang et al. GENOME RESEARCH
- Differential network biology
- (2012) Trey Ideker et al. Molecular Systems Biology
- An expansive human regulatory lexicon encoded in transcription factor footprints
- (2012) Shane Neph et al. NATURE
- The accessible chromatin landscape of the human genome
- (2012) Robert E. Thurman et al. NATURE
- Architecture of the human regulatory network derived from ENCODE data
- (2012) Mark B. Gerstein et al. NATURE
- The UCSC Genome Browser database: extensions and updates 2013
- (2012) Laurence R. Meyer et al. NUCLEIC ACIDS RESEARCH
- An encyclopedia of mouse DNA elements (Mouse ENCODE)
- (2012) et al. GENOME BIOLOGY
- FIMO: scanning for occurrences of a given motif
- (2011) Charles E. Grant et al. BIOINFORMATICS
- Combining literature text mining with microarray data: advances for system biology modeling
- (2011) A. Faro et al. BRIEFINGS IN BIOINFORMATICS
- modMine: flexible access to modENCODE data
- (2011) S. Contrino et al. NUCLEIC ACIDS RESEARCH
- ENCODE whole-genome data in the UCSC Genome Browser: update 2012
- (2011) K. R. Rosenbloom et al. NUCLEIC ACIDS RESEARCH
- The emerging role of p53 in stem cells
- (2011) Giuseppina Bonizzi et al. TRENDS IN MOLECULAR MEDICINE
- Genome-wide analysis of ETS-family DNA-binding in vitro and in vivo
- (2010) Gong-Hong Wei et al. EMBO JOURNAL
- Regulation of p53 in embryonic stem cells
- (2010) Valeriya Solozobova et al. EXPERIMENTAL CELL RESEARCH
- The NIH Roadmap Epigenomics Mapping Consortium
- (2010) Bradley E Bernstein et al. NATURE BIOTECHNOLOGY
- UniPROBE, update 2011: expanded content and search tools in the online database of protein-binding microarray data on protein-DNA interactions
- (2010) K. Robasky et al. NUCLEIC ACIDS RESEARCH
- REDfly v3.0: toward a comprehensive database of transcriptional regulatory elements in Drosophila
- (2010) S. M. Gallo et al. NUCLEIC ACIDS RESEARCH
- Unlocking the secrets of the genome
- (2009) Susan E. Celniker et al. NATURE
- Global mapping of protein-DNA interactions in vivo by digital genomic footprinting
- (2009) Jay R Hesselberth et al. NATURE METHODS
- Integration of External Signaling Pathways with the Core Transcriptional Network in Embryonic Stem Cells
- (2008) Xi Chen et al. CELL
- An Extended Transcriptional Network for Pluripotency of Embryonic Stem Cells
- (2008) Jonghwan Kim et al. CELL
- EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates
- (2008) A. J. Vilella et al. GENOME RESEARCH
- Comprehensive genomic characterization defines human glioblastoma genes and core pathways
- (2008) Roger McLendon et al. NATURE
- Modelling and analysis of gene regulatory networks
- (2008) Guy Karlebach et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
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