Identification of tissue-specific and cold-responsive lncRNAs in Medicago truncatula by high-throughput RNA sequencing
出版年份 2020 全文链接
标题
Identification of tissue-specific and cold-responsive lncRNAs in Medicago truncatula by high-throughput RNA sequencing
作者
关键词
-
出版物
BMC PLANT BIOLOGY
Volume 20, Issue 1, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2020-03-06
DOI
10.1186/s12870-020-2301-1
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Overexpressing lncRNA LAIR increases grain yield and regulates neighbouring gene cluster expression in rice
- (2018) Ying Wang et al. Nature Communications
- Transcriptional read-through of the long non-coding RNA SVALKA governs plant cold acclimation
- (2018) Peter Kindgren et al. Nature Communications
- Novel phosphate deficiency-responsive long non-coding RNAs in the legume model plant Medicago truncatula
- (2017) Tianzuo Wang et al. JOURNAL OF EXPERIMENTAL BOTANY
- Cold Signal Shuttles from Membrane to Nucleus
- (2017) Xiaoyu Guo et al. MOLECULAR CELL
- Plasma Membrane CRPK1-Mediated Phosphorylation of 14-3-3 Proteins Induces Their Nuclear Import to Fine-Tune CBF Signaling during Cold Response
- (2017) Ziyan Liu et al. MOLECULAR CELL
- Differential analysis of RNA-seq incorporating quantification uncertainty
- (2017) Harold Pimentel et al. NATURE METHODS
- Comparative transcriptome analysis between resistant and susceptible tomato allows the identification of lncRNA16397 conferring resistance toPhytophthora infestansby co-expressing glutaredoxin
- (2017) Jun Cui et al. PLANT JOURNAL
- A Nucleus-Localized Long Non-Coding RNA Enhances Drought and Salt Stress Tolerance
- (2017) Tao Qin et al. PLANT PHYSIOLOGY
- Genome-wide identification and functional prediction of cold and/or drought-responsive lncRNAs in cassava
- (2017) Shuxia Li et al. Scientific Reports
- Identification of SUMO modification sites in the base excision repair protein, Ntg1
- (2016) Daniel B. Swartzlander et al. DNA REPAIR
- Expansion Mechanisms and Evolutionary History on Genes Encoding DNA Glycosylases and Their Involvement in Stress and Hormone Signaling
- (2016) Shu-Ye Jiang et al. Genome Biology and Evolution
- Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown
- (2016) Mihaela Pertea et al. Nature Protocols
- Unique features of long non-coding RNA biogenesis and function
- (2016) Jeffrey J. Quinn et al. NATURE REVIEWS GENETICS
- Thecbfstriple mutants reveal the essential functions ofCBFsin cold acclimation and allow the definition of CBF regulons inArabidopsis
- (2016) Yuxin Jia et al. NEW PHYTOLOGIST
- Reversible Leaf Xylem Collapse: A Potential “Circuit Breaker” against Cavitation
- (2016) Yong-Jiang Zhang et al. PLANT PHYSIOLOGY
- Genome-Wide Investigation of MicroRNAs and Their Targets in Response to Freezing Stress in Medicago sativa L., Based on High-Throughput Sequencing
- (2016) Yongjun Shu et al. G3-Genes Genomes Genetics
- Identification and characterization of long non-coding RNAs involved in osmotic and salt stress in Medicago truncatula using genome-wide high-throughput sequencing
- (2015) Tian-Zuo Wang et al. BMC PLANT BIOLOGY
- Long non-coding RNAs and their functions in plants
- (2015) Julia A Chekanova CURRENT OPINION IN PLANT BIOLOGY
- Exploring the Secrets of Long Noncoding RNAs
- (2015) Mingyang Quan et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- RDM4modulates cold stress resistance inArabidopsispartially through theCBF-mediated pathway
- (2015) Zhulong Chan et al. NEW PHYTOLOGIST
- Regulation of the Arabidopsis CBF regulon by a complex low-temperature regulatory network
- (2015) Sunchung Park et al. PLANT JOURNAL
- Genome-wide identification and functional prediction of novel and drought-responsive lincRNAs in Populus trichocarpa
- (2014) Peng Shuai et al. JOURNAL OF EXPERIMENTAL BOTANY
- A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium
- (2014) NATURE BIOTECHNOLOGY
- Cold acclimation-induced freezing tolerance ofMedicago truncatulaseedlings is negatively regulated by ethylene
- (2014) Mingui Zhao et al. PHYSIOLOGIA PLANTARUM
- Identification of Maize Long Non-Coding RNAs Responsive to Drought Stress
- (2014) Wei Zhang et al. PLoS One
- Evolutionary conservation of cold-induced antisense RNAs of FLOWERING LOCUS C in Arabidopsis thaliana perennial relatives
- (2014) Loren Castaings et al. Nature Communications
- Gene regulation by the act of long non-coding RNA transcription
- (2013) Aleksandra E Kornienko et al. BMC BIOLOGY
- A tandem array of CBF/DREB1 genes is located in a major freezing tolerance QTL region on Medicago truncatula chromosome 6
- (2013) Nadim Tayeh et al. BMC GENOMICS
- Utilizing sequence intrinsic composition to classify protein-coding and long non-coding transcripts
- (2013) Liang Sun et al. NUCLEIC ACIDS RESEARCH
- Genetic variability and QTL mapping of freezing tolerance and related traits in Medicago truncatula
- (2013) Komlan Avia et al. THEORETICAL AND APPLIED GENETICS
- Overexpression of AtOGG1, a DNA glycosylase/AP lyase, enhances seed longevity and abiotic stress tolerance in Arabidopsis
- (2012) Huhui Chen et al. JOURNAL OF EXPERIMENTAL BOTANY
- Modular regulatory principles of large non-coding RNAs
- (2012) Mitchell Guttman et al. NATURE
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Low-temperature perception leading to gene expression and cold tolerance in higher plants
- (2012) Marc R. Knight et al. NEW PHYTOLOGIST
- Genome-Wide Analysis Uncovers Regulation of Long Intergenic Noncoding RNAs in Arabidopsis
- (2012) J. Liu et al. PLANT CELL
- PhyloCSF: a comparative genomics method to distinguish protein coding and non-coding regions
- (2011) M. F. Lin et al. BIOINFORMATICS
- The Pfam protein families database
- (2011) M. Punta et al. NUCLEIC ACIDS RESEARCH
- Comparative studies on tolerance of Medicago truncatula and Medicago falcata to freezing
- (2011) Li-Li Zhang et al. PLANTA
- Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries
- (2011) Daniel Aird et al. GENOME BIOLOGY
- Decoding the function of nuclear long non-coding RNAs
- (2010) Ling-Ling Chen et al. CURRENT OPINION IN CELL BIOLOGY
- Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
- (2010) Cole Trapnell et al. NATURE BIOTECHNOLOGY
- Vernalization-Mediated Epigenetic Silencing by a Long Intronic Noncoding RNA
- (2010) J. B. Heo et al. SCIENCE
- Gene ontology analysis for RNA-seq: accounting for selection bias
- (2010) Matthew D Young et al. GENOME BIOLOGY
- Evolution and Functions of Long Noncoding RNAs
- (2009) Chris P. Ponting et al. CELL
- Translating Medicago truncatula genomics to crop legumes
- (2009) Nevin Dale Young et al. CURRENT OPINION IN PLANT BIOLOGY
- Roles for Arabidopsis CAMTA Transcription Factors in Cold-Regulated Gene Expression and Freezing Tolerance
- (2009) C. J. Doherty et al. PLANT CELL
- Targeted 3' Processing of Antisense Transcripts Triggers Arabidopsis FLC Chromatin Silencing
- (2009) F. Liu et al. SCIENCE
- WGCNA: an R package for weighted correlation network analysis
- (2008) Peter Langfelder et al. BMC BIOINFORMATICS
- Noncoding Transcription by RNA Polymerase Pol IVb/Pol V Mediates Transcriptional Silencing of Overlapping and Adjacent Genes
- (2008) Andrzej T. Wierzbicki et al. CELL
- Identification of ICE2, a gene involved in cold acclimation which determines freezing tolerance in Arabidopsis thaliana
- (2008) Oksana V. Fursova et al. GENE
- The Chilling Injury Induced by High Root Temperature in the Leaves of Rice Seedlings
- (2008) K. Suzuki et al. PLANT AND CELL PHYSIOLOGY
- Identification of SFR6, a key component in cold acclimation acting post-translationally on CBF function
- (2008) Heather Knight et al. PLANT JOURNAL
- Comparative Genomic Sequence and Expression Analyses of Medicago truncatula and Alfalfa Subspecies falcata COLD-ACCLIMATION-SPECIFIC Genes
- (2008) J. C. Pennycooke et al. PLANT PHYSIOLOGY
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