Using whole-genome SNP data to reconstruct a large multi-generation pedigree in apple germplasm

Identification of unknown apple (Malus × domestica) cultivars demonstrates the impact of local breeding program on cultivar diversity

(2018) Briana L. Gross et al.   GENETIC RESOURCES AND CROP EVOLUTION

Reproductive biology and genealogy in the endangered Iberian lynx: Implications for conservation

(2018) Maria Lucena-Perez et al.   MAMMALIAN BIOLOGY

SNP Data Quality Control in a National Beef and Dairy Cattle System and Highly Accurate SNP Based Parentage Verification and Identification

(2018) Matthew C. McClure et al.   Frontiers in Genetics

Genetic analysis of a major international collection of cultivated apple varieties reveals previously unknown historic heteroploid and inbred relationships

(2018) Matthew Ordidge et al.   PLoS One

Genetic Characterization of the Apple Germplasm Collection in Central Italy: The Value of Local Varieties

(2018) Gianpiero Marconi et al.   Frontiers in Plant Science

High-quality de novo assembly of the apple genome and methylome dynamics of early fruit development

(2017) Nicolas Daccord et al.   NATURE GENETICS

Genetic diversity, population structure, and linkage disequilibrium of elite and local apple accessions from Belgium using the IRSC array

(2017) Stijn Vanderzande et al.   Tree Genetics & Genomes

Unravelling genetic diversity and cultivar parentage in the Danish apple gene bank collection

(2017) Bjarne Larsen et al.   Tree Genetics & Genomes

Genome-Wide Association Mapping of Flowering and Ripening Periods in Apple

(2017) Jorge Urrestarazu et al.   Frontiers in Plant Science

Elucidation of the ‘Honeycrisp’ pedigree through haplotype analysis with a multi-family integrated SNP linkage map and a large apple (Malus×domestica) pedigree-connected SNP data set

(2017) Nicholas P Howard et al.   Horticulture Research

Analysis of the genetic diversity and structure across a wide range of germplasm reveals prominent gene flow in apple at the European level

(2016) Jorge Urrestarazu et al.   BMC PLANT BIOLOGY

A Unique haplotype found in apple accessions exhibiting early bud-break could serve as a marker for breeding apples with low chilling requirements

(2016) Taly Trainin et al.   MOLECULAR BREEDING

Development and validation of the Axiom®Apple480K SNP genotyping array

(2016) Luca Bianco et al.   PLANT JOURNAL

Genetic Diversity, Population Structure, Parentage Analysis, and Construction of Core Collections in the French Apple Germplasm Based on SSR Markers

(2016) Ludivine Lassois et al.   PLANT MOLECULAR BIOLOGY REPORTER

Genetic pool structure of local apple cultivars from Portugal assessed by microsatellites

(2016) V. Ferreira et al.   Tree Genetics & Genomes

Molecular Characterisation of the Swiss Fruit Genetic Resources

(2015) Andreas Bühlmann et al.   Erwerbs-Obstbau

Parentage Reconstruction in Eucalyptus nitens Using SNPs and Microsatellite Markers: A Comparative Analysis of Marker Data Power and Robustness

(2015) Emily J. Telfer et al.   PLoS One

Genetic diversity in Malus ×domestica (Rosaceae) through time in response to domestication

(2014) Briana L. Gross et al.   AMERICAN JOURNAL OF BOTANY

One-step reconstruction of multi-generation pedigree networks in apple (Malus × domestica Borkh.) and the parentage of Golden Delicious

(2014) Silvio Salvi et al.   MOLECULAR BREEDING

Estimating quantitative genetic parameters in wild populations: a comparison of pedigree and genomic approaches

(2014) Camillo Bérénos et al.   MOLECULAR ECOLOGY

Genetic Diversity, Population Structure and Construction of a Core Collection of Apple Cultivars from Italian Germplasm

(2014) Wei Liang et al.   PLANT MOLECULAR BIOLOGY REPORTER

Analysis of the genetic diversity of local apple cultivars from mountainous areas from Aragon (Northeastern Spain)

(2014) Ana Pina et al.   SCIENTIA HORTICULTURAE

Bayesian QTL analyses using pedigreed families of an outcrossing species, with application to fruit firmness in apple

(2014) M. C. A. M. Bink et al.   THEORETICAL AND APPLIED GENETICS

A strategy for developing representative germplasm sets for systematic QTL validation, demonstrated for apple, peach, and sweet cherry

(2014) C. P. Peace et al.   Tree Genetics & Genomes

‘Schmidt's Antonovka’ is identical to ‘Common Antonovka’, an apple cultivar widely used in Russia in breeding for biotic and abiotic stresses

(2013) Anna Pikunova et al.   Tree Genetics & Genomes

Resolving the Parentage of the Apple Cultivar ‘Meran’

(2012) Sanja Baric et al.   Erwerbs-Obstbau

Comparison of genetic diversity structure analyses of SSR molecular marker data within apple (Malus × domestica) genetic resources

(2012) Josef Patzak et al.   GENOME

Pedimap: Software for the Visualization of Genetic and Phenotypic Data in Pedigrees

(2012) R. E. Voorrips et al.   JOURNAL OF HEREDITY

Large-scale parentage analysis in an extended set of grapevine cultivars (Vitis vinifera L.)

(2012) Thierry Lacombe et al.   THEORETICAL AND APPLIED GENETICS

Genetic diversity and structure of local apple cultivars from Northeastern Spain assessed by microsatellite markers

(2012) Jorge Urrestarazu et al.   Tree Genetics & Genomes

New Insight into the History of Domesticated Apple: Secondary Contribution of the European Wild Apple to the Genome of Cultivated Varieties

(2012) Amandine Cornille et al.   PLoS Genetics

Genetic Diversity and Characterization of a Core Collection of Malus Germplasm Using Simple Sequence Repeats (SSRs)

(2011) Sarah M. Potts et al.   PLANT MOLECULAR BIOLOGY REPORTER

Genetic structure and domestication history of the grape

(2011) Sean Myles et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

DNA fingerprints of dogs and cats

(2010) A. J. JEFFREYS et al.   ANIMAL GENETICS

Microsatellite genotyping of apple (Malus × domestica Borkh.) genetic resources in the Netherlands: application in collection management and variety identification

(2010) R. van Treuren et al.   GENETIC RESOURCES AND CROP EVOLUTION

Genotyping of pedigreed apple breeding material with a genome-covering set of SSRs: trueness-to-type of cultivars and their parentages

(2010) K. M. Evans et al.   MOLECULAR BREEDING

A practical guide to methods of parentage analysis

(2009) ADAM G. JONES et al.   Molecular Ecology Resources

Molecular characterisation of indigenous Swedish apple cultivars based on SSR and S-allele analysis

(2008) L. Garkava-Gustavsson et al.   HEREDITAS

Heritability in the genomics era — concepts and misconceptions

(2008) Peter M. Visscher et al.   NATURE REVIEWS GENETICS