标题
Virus expression detection reveals RNA-sequencing contamination in TCGA
作者
关键词
-
出版物
BMC GENOMICS
Volume 21, Issue 1, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2020-01-28
DOI
10.1186/s12864-020-6483-6
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Unique, dual-indexed sequencing adapters with UMIs effectively eliminate index cross-talk and significantly improve sensitivity of massively parallel sequencing
- (2018) Laura E. MacConaill et al. BMC GENOMICS
- Computational correction of index switching in multiplexed sequencing libraries
- (2018) Anton J M Larsson et al. NATURE METHODS
- Viral sequences in human cancer
- (2018) Paul G. Cantalupo et al. VIROLOGY
- Epstein-Barr Virus-Positive Cancers Show Altered B-Cell Clonality
- (2018) Sara R. Selitsky et al. mSystems
- Distinguishing potential bacteria-tumor associations from contamination in a secondary data analysis of public cancer genome sequence data
- (2017) Kelly M. Robinson et al. Microbiome
- Functional Genomic Landscape of Human Breast Cancer Drivers, Vulnerabilities, and Resistance
- (2016) Richard Marcotte et al. CELL
- Simulation-based comprehensive benchmarking of RNA-seq aligners
- (2016) Giacomo Baruzzo et al. NATURE METHODS
- HeLa Nucleic Acid Contamination in The Cancer Genome Atlas Leads to the Misidentification of Human Papillomavirus 18
- (2015) Paul G. Cantalupo et al. JOURNAL OF VIROLOGY
- Prevalence and Characterization of Murine Leukemia Virus Contamination in Human Cell Lines
- (2015) Cord C. Uphoff et al. PLoS One
- BioBloom tools: fast, accurate and memory-efficient host species sequence screening using bloom filters
- (2014) Justin Chu et al. BIOINFORMATICS
- High-Throughput RNA Sequencing-Based Virome Analysis of 50 Lymphoma Cell Lines from the Cancer Cell Line Encyclopedia Project
- (2014) Subing Cao et al. JOURNAL OF VIROLOGY
- Diverse and Widespread Contamination Evident in the Unmapped Depths of High Throughput Sequencing Data
- (2014) Richard W. Lusk PLoS One
- Mycoplasma contamination in the 1000 Genomes Project
- (2014) William B Langdon BioData Mining
- The landscape of viral expression and host gene fusion and adaptation in human cancer
- (2013) Ka-Wei Tang et al. Nature Communications
- STAR: ultrafast universal RNA-seq aligner
- (2012) Alexander Dobin et al. BIOINFORMATICS
- PathSeq: software to identify or discover microbes by deep sequencing of human tissue
- (2011) Aleksandar D Kostic et al. NATURE BIOTECHNOLOGY
- Identification of Replication Competent Murine Gammaretroviruses in Commonly Used Prostate Cancer Cell Lines
- (2011) Karen Sandell Sfanos et al. PLoS One
- Contamination of clinical specimens with MLV-encoding nucleic acids: implications for XMRV and other candidate human retroviruses
- (2011) Robert A Smith Retrovirology
- Recombinant Origin of the Retrovirus XMRV
- (2011) T. Paprotka et al. SCIENCE
- Meta-analysis of the impact of human papillomavirus (HPV) on cancer risk and overall survival in head and neck squamous cell carcinomas (HNSCC)
- (2010) Farshid Dayyani et al. Head and Neck Optical Diagnostics Society
- High levels of Epstein–Barr virus DNA in latently infected gastric adenocarcinoma
- (2008) Julie L Ryan et al. LABORATORY INVESTIGATION
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExplorePublish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn More