Clinical use of whole genome sequencing for Mycobacterium tuberculosis

Clinical implications of molecular drug resistance testing for Mycobacterium tuberculosis: a TBNET/RESIST-TB consensus statement

(2016) J. Domínguez et al.   INTERNATIONAL JOURNAL OF TUBERCULOSIS AND LUNG DISEASE

Rapid, comprehensive, and affordable mycobacterial diagnosis with whole-genome sequencing: a prospective study

(2016) Louise J Pankhurst et al.   Lancet Respiratory Medicine

Personalizing therapy for multidrug resistant TB: the potential of Rapid Whole Genome Sequencing

(2015) Josephine M Bryant et al.   Expert Review of Anti-Infective Therapy

Early insights into the potential of the Oxford Nanopore MinION for the detection of antimicrobial resistance genes

(2015) Kim Judge et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Clinical Application of Whole-Genome Sequencing To Inform Treatment for Multidrug-Resistant Tuberculosis Cases

(2015) Adam A. Witney et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Rapid Whole-Genome Sequencing of Mycobacterium tuberculosis Isolates Directly from Clinical Samples

(2015) Amanda C. Brown et al.   JOURNAL OF CLINICAL MICROBIOLOGY

PhyResSE: a Web Tool Delineating Mycobacterium tuberculosis Antibiotic Resistance and Lineage from Whole-Genome Sequencing Data

(2015) Silke Feuerriegel et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Whole-genome sequencing for prediction of Mycobacterium tuberculosis drug susceptibility and resistance: a retrospective cohort study

(2015) Timothy M Walker et al.   LANCET INFECTIOUS DISEASES

Detection of Drug-Resistant Tuberculosis by Xpert MTB/RIF in Swaziland

(2015) Elisabeth Sanchez-Padilla et al.   NEW ENGLAND JOURNAL OF MEDICINE

Rapid antibiotic-resistance predictions from genome sequence data for Staphylococcus aureus and Mycobacterium tuberculosis

(2015) Phelim Bradley et al.   Nature Communications

Rapid determination of anti-tuberculosis drug resistance from whole-genome sequences

(2015) Francesc Coll et al.   Genome Medicine

Management of patients with multidrug-resistant/extensively drug-resistant tuberculosis in Europe: a TBNET consensus statement

(2014) C. Lange et al.   EUROPEAN RESPIRATORY JOURNAL

Profiling of rpoB Mutations and MICs for Rifampin and Rifabutin in Mycobacterium tuberculosis

(2014) F. B. Jamieson et al.   JOURNAL OF CLINICAL MICROBIOLOGY

A defining decade in DNA sequencing

(2014) John D McPherson   NATURE METHODS

Benchmarking short sequence mapping tools

(2013) Ayat Hatem et al.   BMC BIOINFORMATICS

Genome sequencing of 161 Mycobacterium tuberculosis isolates from China identifies genes and intergenic regions associated with drug resistance

(2013) Hongtai Zhang et al.   NATURE GENETICS

Whole-Genome Sequencing for Rapid Susceptibility Testing of M. tuberculosis

(2013) Claudio U. Köser et al.   NEW ENGLAND JOURNAL OF MEDICINE

The Rationale for Using Rifabutin in the Treatment of MDR and XDR Tuberculosis Outbreaks

(2013) Frederick A. Sirgel et al.   PLoS One

First Evaluation after Implementation of a Quality Control System for the Second Line Drug Susceptibility Testing of Mycobacterium tuberculosis Joint Efforts in Low and High Incidence Countries

(2013) Doris Hillemann et al.   PLoS One

Study of the Rifampin Monoresistance Mechanism in Mycobacterium tuberculosis

(2012) Y. Pang et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Rapid Whole-Genome Sequencing for Investigation of a Suspected Tuberculosis Outbreak

(2012) M. E. Torok et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Whole-genome sequencing to delineate Mycobacterium tuberculosis outbreaks: a retrospective observational study

(2012) Timothy M Walker et al.   LANCET INFECTIOUS DISEASES

New Insights into Fluoroquinolone Resistance in Mycobacterium tuberculosis: Functional Genetic Analysis of gyrA and gyrB Mutations

(2012) Seidu Malik et al.   PLoS One

Single nucleotide polymorphisms in Mycobacterium tuberculosis and the need for a curated database

(2012) David Stucki et al.   TUBERCULOSIS

Treatment Outcomes of Isoniazid-Resistant Tuberculosis Patients, Western Cape Province, South Africa

(2011) K. R. Jacobson et al.   CLINICAL INFECTIOUS DISEASES

Multidrug-resistant tuberculosis (MDR-TB) treatment in the UK: a study of injectable use and toxicity in practice

(2011) A. Sturdy et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Mutations outside the rifampicin resistance-determining region associated with rifampicin resistance in Mycobacterium tuberculosis

(2011) Gilman Kit Hang Siu et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Whole-Genome Sequencing and Social-Network Analysis of a Tuberculosis Outbreak

(2011) Jennifer L. Gardy et al.   NEW ENGLAND JOURNAL OF MEDICINE

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Rapid Detection ofMycobacterium tuberculosisand Rifampin Resistance by Use of On-Demand, Near-Patient Technology

(2009) Danica Helb et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Feasibility of the GenoType MTBDRsl Assay for Fluoroquinolone, Amikacin-Capreomycin, and Ethambutol Resistance Testing of Mycobacterium tuberculosis Strains and Clinical Specimens

(2009) D. Hillemann et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Tuberculosis Drug Resistance Mutation Database

(2009) Andreas Sandgren et al.   PLOS MEDICINE

XDR-TB genome sequencing: a glimpse of the microbiology of the future

(2008) NJ Loman et al.   Future Microbiology