Local transmission and global dissemination of New Delhi Metallo-Beta-Lactamase (NDM): a whole genome analysis

Plasmid Carriage ofblaNDM-1in Clinical Acinetobacter baumannii Isolates from India

(2014) Lim S. Jones et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Genome Sequencing of an Extended Series of NDM-Producing Klebsiella pneumoniae Isolates from Neonatal Infections in a Nepali Hospital Characterizes the Extent of Community- versus Hospital-Associated Transmission in an Endemic Setting

(2014) N. Stoesser et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

In SilicoDetection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing

(2014) Alessandra Carattoli et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Genomic epidemiology of Neisseria gonorrhoeae with reduced susceptibility to cefixime in the USA: a retrospective observational study

(2014) Yonatan H Grad et al.   LANCET INFECTIOUS DISEASES

Single-molecule sequencing to track plasmid diversity of hospital-associated carbapenemase-producing Enterobacteriaceae

(2014) S. Conlan et al.   Science Translational Medicine

OXA-181-producing Klebsiella pneumoniae establishing in Singapore

(2013) Michelle N D Balm et al.   BMC INFECTIOUS DISEASES

Epidemiology and characteristics of antimicrobial resistance in China

(2013) Yong-Hong Xiao et al.   DRUG RESISTANCE UPDATES

The spread and acquisition of NDM-1: a multifactorial problem

(2013) Alexander M Wailan et al.   Expert Review of Anti-Infective Therapy

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Developing insights into the mechanisms of evolution of bacterial pathogens from whole-genome sequences

(2012) Josephine Bryant et al.   Future Microbiology

Whole-genome analysis of diverse Chlamydia trachomatis strains identifies phylogenetic relationships masked by current clinical typing

(2012) Simon R Harris et al.   NATURE GENETICS

Genetic relationships among 527 Gram-negative bacterial plasmids

(2012) Yunyun Zhou et al.   PLASMID

Identification and characterization of a novel incompatibility group X3 plasmid carrying blaNDM-1 in Enterobacteriaceae isolates with epidemiological links to multiple geographical areas in China

(2012) Pak-Leung Ho et al.   Emerging Microbes & Infections

Genetic Features ofblaNDM-1-Positive Enterobacteriaceae

(2011) Laurent Poirel et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

BIGSdb: Scalable analysis of bacterial genome variation at the population level

(2011) Keith A Jolley et al.   BMC BIOINFORMATICS

Trends in antimicrobial resistance in intensive care units in the United States

(2011) Kavitha Prabaker et al.   Current Opinion in Critical Care

Recent trends in antibiotic resistance in European ICUs

(2011) Pleun J. van Duijn et al.   Current Opinion in Critical Care

Plasmid-Mediated Resistance in Enterobacteriaceae

(2011) Constance Schultsz et al.   DRUGS

Molecular Characterization of Newly Emerged blaKPC-2-Producing Klebsiella pneumoniae in Singapore

(2011) M. N. D. Balm et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Rapid Pneumococcal Evolution in Response to Clinical Interventions

(2011) N. J. Croucher et al.   SCIENCE

Integrons

(2010) Guillaume Cambray et al.   Annual Review of Genetics

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Carbapenem-resistant Acinetobacter baumannii and Klebsiella pneumoniae across a hospital system: impact of post-acute care facilities on dissemination

(2010) F. Perez et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Emergence of a new antibiotic resistance mechanism in India, Pakistan, and the UK: a molecular, biological, and epidemiological study

(2010) Karthikeyan K Kumarasamy et al.   LANCET INFECTIOUS DISEASES

Evolution of MRSA During Hospital Transmission and Intercontinental Spread

(2010) S. R. Harris et al.   SCIENCE

Resistance Plasmid Families in Enterobacteriaceae

(2009) A. Carattoli   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Characterization of a New Metallo- -Lactamase Gene, blaNDM-1, and a Novel Erythromycin Esterase Gene Carried on a Unique Genetic Structure in Klebsiella pneumoniae Sequence Type 14 from India

(2009) D. Yong et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Summary trends for the Meropenem Yearly Susceptibility Test Information Collection Program: a 10-year experience in the United States (1999–2008)

(2009) Paul R. Rhomberg et al.   DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Extended-spectrum β-lactamase-producing Enterobacteriaceae: an emerging public-health concern

(2008) Johann DD Pitout et al.   LANCET INFECTIOUS DISEASES

Probabilistic Phylogenetic Inference with Insertions and Deletions

(2008) Elena Rivas et al.   PLoS Computational Biology