Transcriptome analysis reveals the effects of sugar metabolism and auxin and cytokinin signaling pathways on root growth and development of grafted apple

New mechanistic links between sugar and hormone signalling networks

(2015) Karin Ljung et al.   CURRENT OPINION IN PLANT BIOLOGY

Sucrose is an early modulator of the key hormonal mechanisms controlling bud outgrowth in Rosa hybrida

(2015) François Barbier et al.   JOURNAL OF EXPERIMENTAL BOTANY

A Novel Arabidopsis MicroRNA Promotes IAA Biosynthesis via the Indole-3-acetaldoxime Pathway by Suppressing SUPERROOT1

(2015) Wenwen Kong et al.   PLANT AND CELL PHYSIOLOGY

Adventitious Roots and Lateral Roots: Similarities and Differences

(2014) Catherine Bellini et al.   Annual Review of Plant Biology

Identification of mRNAs that Move Over Long Distances Using an RNA-Seq Analysis of Arabidopsis/Nicotiana benthamiana Heterografts

(2014) Michitaka Notaguchi et al.   PLANT AND CELL PHYSIOLOGY

FourArabidopsis AREB/ABF transcription factors function predominantly in gene expression downstream of SnRK2 kinases in abscisic acid signalling in response to osmotic stress

(2014) TAKUYA YOSHIDA et al.   PLANT CELL AND ENVIRONMENT

Branching Out in Roots: Uncovering Form, Function, and Regulation

(2014) J. A. Atkinson et al.   PLANT PHYSIOLOGY

Root Nutrient Foraging

(2014) R. F. H. Giehl et al.   PLANT PHYSIOLOGY

A Spatial Accommodation by Neighboring Cells Is Required for Organ Initiation in Arabidopsis

(2014) J. E. M. Vermeer et al.   SCIENCE

Perception of root-derived peptides by shoot LRR-RKs mediates systemic N-demand signaling

(2014) R. Tabata et al.   SCIENCE

Histological characterization of the lateral root primordium development in rice

(2014) Jun Ni et al.   Botanical Studies

Changes in sugar content and proteome of potato in response to cold and dehydration stress and their implications for cryopreservation

(2013) Raquel Folgado et al.   Journal of Proteomics

Subcellular localization and vacuolar targeting of sorbitol dehydrogenase in apple seed

(2013) Xiu-Ling Wang et al.   PLANT SCIENCE

Don’t kill the messenger: Long-distance trafficking of mRNA molecules

(2013) Ziv Spiegelman et al.   PLANT SCIENCE

Lateral root development in Arabidopsis: fifty shades of auxin

(2013) Julien Lavenus et al.   TRENDS IN PLANT SCIENCE

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Auxin reflux between the endodermis and pericycle promotes lateral root initiation

(2012) Peter Marhavý et al.   EMBO JOURNAL

Phloem-MobileAux/IAATranscripts Target to the Root Tip and Modify Root ArchitectureF

(2012) Michitaka Notaguchi et al.   Journal of Integrative Plant Biology

Soluble Carbohydrates Regulate Auxin Biosynthesis via PIF Proteins in Arabidopsis

(2012) I. Sairanen et al.   PLANT CELL

The Snf1-related protein kinases SnRK2.4 and SnRK2.10 are involved in maintenance of root system architecture during salt stress

(2012) Fionn McLoughlin et al.   PLANT JOURNAL

The mRNA of a Knotted1-like transcription factor of potato is phloem mobile

(2012) Ameya Mahajan et al.   PLANT MOLECULAR BIOLOGY

Diverse Roles of Strigolactone Signaling in Maize Architecture and the Uncoupling of a Branching-Specific Subnetwork

(2012) J. C. Guan et al.   PLANT PHYSIOLOGY

Alternate Bearing in Citrus: Changes in the Expression of Flowering Control Genes and in Global Gene Expression in ON- versus OFF-Crop Trees

(2012) Liron Shalom et al.   PLoS One

Transcription factor WRKY23 assists auxin distribution patterns during Arabidopsis root development through local control on flavonol biosynthesis

(2012) W. Grunewald et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Apple miRNAs and tasiRNAs with novel regulatory networks

(2012) Rui Xia et al.   GENOME BIOLOGY

Auxin, cytokinin and the control of shoot branching

(2011) Dörte Müller et al.   ANNALS OF BOTANY

Brassinosteroids control meristem size by promoting cell cycle progression in Arabidopsis roots

(2011) M.-P. Gonzalez-Garcia et al.   DEVELOPMENT

Cytokinin Modulates Endocytic Trafficking of PIN1 Auxin Efflux Carrier to Control Plant Organogenesis

(2011) Peter Marhavý et al.   DEVELOPMENTAL CELL

Auxin minimum defines a developmental window for lateral root initiation

(2011) Joseph G. Dubrovsky et al.   NEW PHYTOLOGIST

TheArabidopsisD-Type Cyclin CYCD2;1 and the Inhibitor ICK2/KRP2 Modulate Auxin-Induced Lateral Root Formation

(2011) Luis Sanz et al.   PLANT CELL

Genome-wide transcriptome dissection of the rice root system: implications for developmental and physiological functions

(2011) Hinako Takehisa et al.   PLANT JOURNAL

The genome of the domesticated apple (Malus × domestica Borkh.)

(2010) Riccardo Velasco et al.   NATURE GENETICS

ABI4 Mediates Abscisic Acid and Cytokinin Inhibition of Lateral Root Formation by Reducing Polar Auxin Transport in Arabidopsis

(2010) D. Shkolnik-Inbar et al.   PLANT CELL

The subcellular distribution of the Arabidopsis histidine phosphotransfer proteins is independent of cytokinin signaling

(2010) Jayson A. Punwani et al.   PLANT JOURNAL

Gibberellic acid insensitive mRNA transport in both directions between stock and scion in Malus

(2010) Haiyan Xu et al.   Tree Genetics & Genomes

Genetic control of root development in rice, the model cereal

(2010) Yoan Coudert et al.   TRENDS IN PLANT SCIENCE

Adaptation of a seedling micro-grafting technique to the study of long-distance signaling in flowering of Arabidopsis thaliana

(2009) Michitaka Notaguchi et al.   JOURNAL OF PLANT RESEARCH

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Survival of the flexible: hormonal growth control and adaptation in plant development

(2009) Hanno Wolters et al.   NATURE REVIEWS GENETICS

Glucose and Auxin Signaling Interaction in Controlling Arabidopsis thaliana Seedlings Root Growth and Development

(2009) Bhuwaneshwar S. Mishra et al.   PLoS One

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

Low-temperature effect on enzyme activities involved in sucrose–starch partitioning in salt-stressed and salt-acclimated cotyledons of quinoa (Chenopodium quinoa Willd.) seedlings

(2008) Mariana Rosa et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Auxin acts as a local morphogenetic trigger to specify lateral root founder cells

(2008) J. G. Dubrovsky et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Genetic Framework for the Control of Cell Division and Differentiation in the Root Meristem

(2008) R. D. Ioio et al.   SCIENCE

Windthrow resistance of apple trees grafted in an orchard

(2007) Akio Koizumi et al.   JOURNAL OF WOOD SCIENCE