Genome analysis and avirulence gene cloning using a high-density RADseq linkage map of the flax rust fungus, Melampsora lini

QTL mapping of temperature sensitivity reveals candidate genes for thermal adaptation and growth morphology in the plant pathogenic fungus Zymoseptoria tritici

(2016) M H Lendenmann et al.   HEREDITY

Flow cytometry reveals that the rust fungus,Uromyces bidentis(Pucciniales), possesses the largest fungal genome reported-2489 Mbp

(2015) Ana Paula Ramos et al.   MOLECULAR PLANT PATHOLOGY

Intrinsically disordered proteins in cellular signalling and regulation

(2015) Peter E. Wright et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Where to cross? New insights into the location of meiotic crossovers

(2015) Christine Mézard et al.   TRENDS IN GENETICS

The coffee rust crises in Colombia and Central America (2008–2013): impacts, plausible causes and proposed solutions

(2015) Jacques Avelino et al.   Food Security

Using linkage maps to correct and scaffold de novo genome assemblies: methods, challenges, and computational tools

(2015) Janna L. Fierst   Frontiers in Genetics

Rapid evolution of avirulence genes in rice blast fungus Magnaporthe oryzae

(2014) Ju Huang et al.   BMC GENETICS

Genome wide SNP identification in chickpea for use in development of a high density genetic map and improvement of chickpea reference genome assembly

(2014) Amit A Deokar et al.   BMC GENOMICS

Classification of Intrinsically Disordered Regions and Proteins

(2014) Robin van der Lee et al.   CHEMICAL REVIEWS

Inside plant: biotrophic strategies to modulate host immunity and metabolism

(2014) Bilal Ökmen et al.   CURRENT OPINION IN PLANT BIOLOGY

Genotype-by-sequencing of the plant-pathogenic fungiPyrenophora teresandSphaerulina musivautilizing Ion Torrent sequence technology

(2014) Jared M. Leboldus et al.   MOLECULAR PLANT PATHOLOGY

High-Resolution Genetic Map for Understanding the Effect of Genome-Wide Recombination Rate on Nucleotide Diversity in Watermelon

(2014) Umesh K. Reddy et al.   G3-Genes Genomes Genetics

High-Resolution Linkage Map and Chromosome-Scale Genome Assembly for Cassava ( Manihot esculenta Crantz) from 10 Populations

(2014)   G3-Genes Genomes Genetics

Quantitative Trait Locus Mapping of Melanization in the Plant Pathogenic Fungus Zymoseptoria tritici

(2014) Mark H. Lendenmann et al.   G3-Genes Genomes Genetics

The Ins and Outs of Rust Haustoria

(2014) Diana P. Garnica et al.   PLoS Pathogens

Genome size analyses of Pucciniales reveal the largest fungal genomes

(2014) Sílvia Tavares et al.   Frontiers in Plant Science

Genome-wide patterns of segregation and linkage disequilibrium: the construction of a linkage genetic map of the poplar rust fungus Melampsora larici-populina

(2014) Michaël Pernaci et al.   Frontiers in Plant Science

Annotation of a hybrid partial genome of the coffee rust (Hemileia vastatrix) contributes to the gene repertoire catalog of the Pucciniales

(2014) Marco A. Cristancho et al.   Frontiers in Plant Science

The genome sequence and effector complement of the flax rust pathogen Melampsora lini

(2014) Adnane Nemri et al.   Frontiers in Plant Science

The evolving fungal genome

(2014) Eva H. Stukenbrock et al.   Fungal Biology Reviews

Genetic anchoring of whole-genome shotgun assemblies

(2014) Martin Mascher et al.   Frontiers in Genetics

Initiation of Meiotic Recombination: How and Where? Conservation and Specificities Among Eukaryotes

(2013) Bernard de Massy   Annual Review of Genetics

Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation

(2013) Jizeng Jia et al.   NATURE

Sequence assembly demystified

(2013) Niranjan Nagarajan et al.   NATURE REVIEWS GENETICS

Intrinsic Disorder in Pathogen Effectors: Protein Flexibility as an Evolutionary Hallmark in a Molecular Arms Race

(2013) M. Marin et al.   PLANT CELL

Draft Genome Sequence, and a Sequence-Defined Genetic Linkage Map of the Legume Crop Species Lupinus angustifolius L

(2013) Huaan Yang et al.   PLoS One

Evolution of recombination in eutherian mammals: insights into mechanisms that affect recombination rates and crossover interference

(2013) J. Segura et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Bridging the genotyping gap: using genotyping by sequencing (GBS) to add high-density SNP markers and new value to traditional bi-parental mapping and breeding populations

(2013) Jennifer Spindel et al.   THEORETICAL AND APPLIED GENETICS

MetaDisorder: a meta-server for the prediction of intrinsic disorder in proteins

(2012) Lukasz P Kozlowski et al.   BMC BIOINFORMATICS

Control of meiotic recombination frequency in plant genomes

(2012) Ian R Henderson   CURRENT OPINION IN PLANT BIOLOGY

How to build a pathogen detector: structural basis of NB-LRR function

(2012) Frank LW Takken et al.   CURRENT OPINION IN PLANT BIOLOGY

Overexpression of a Novel Biotrophy-Specific Colletotrichum truncatum Effector, CtNUDIX, in Hemibiotrophic Fungal Phytopathogens Causes Incompatibility with Their Host Plants

(2012) Vijai Bhadauria et al.   EUKARYOTIC CELL

The rust transferred proteins-a new family of effector proteins exhibiting protease inhibitor function

(2012) Klara Pretsch et al.   MOLECULAR PLANT PATHOLOGY

Genome Sequencing and Mapping Reveal Loss of Heterozygosity as a Mechanism for Rapid Adaptation in the Vegetable Pathogen Phytophthora capsici

(2012) Kurt H. Lamour et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Structural Basis for Interactions of the Phytophthora sojae RxLR Effector Avh5 with Phosphatidylinositol 3-Phosphate and for Host Cell Entry

(2012) Furong Sun et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

The Genomes of the Fungal Plant Pathogens Cladosporium fulvum and Dothistroma septosporum Reveal Adaptation to Different Hosts and Lifestyles But Also Signatures of Common Ancestry

(2012) Pierre J. G. M. de Wit et al.   PLoS Genetics

A first genome assembly of the barley fungal pathogen Pyrenophora teres f. teres

(2012) Simon R Ellwood et al.   GENOME BIOLOGY

The Emergence of Ug99 Races of the Stem Rust Fungus is a Threat to World Wheat Production

(2011) Ravi P. Singh et al.   Annual Review of Phytopathology

Emergency response to the incursion of an exotic myrtaceous rust in Australia

(2011) Angus J. Carnegie et al.   AUSTRALASIAN PLANT PATHOLOGY

The role of effectors of biotrophic and hemibiotrophic fungi in infection

(2011) Markus Koeck et al.   CELLULAR MICROBIOLOGY

New insights in plant immunity signaling activation

(2011) Maud Bernoux et al.   CURRENT OPINION IN PLANT BIOLOGY

Global status of stripe rust: a review of historical and current threats

(2011) Colin R. Wellings   EUPHYTICA

The recombination landscape in Arabidopsis thaliana F2 populations

(2011) P A Salomé et al.   HEREDITY

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

(2011) F. Sievers et al.   Molecular Systems Biology

SignalP 4.0: discriminating signal peptides from transmembrane regions

(2011) Thomas Nordahl Petersen et al.   NATURE METHODS

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

Next Generation Sequencing Provides Rapid Access to the Genome of Puccinia striiformis f. sp. tritici, the Causal Agent of Wheat Stripe Rust

(2011) Dario Cantu et al.   PLoS One

Obligate biotrophy features unraveled by the genomic analysis of rust fungi

(2011) S. Duplessis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phosphatidylinositol monophosphate-binding interface in the oomycete RXLR effector AVR3a is required for its stability in host cells to modulate plant immunity

(2011) T. Yaeno et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Effector diversification within compartments of the Leptosphaeria maculans genome affected by Repeat-Induced Point mutations

(2011) Thierry Rouxel et al.   Nature Communications

Stacks : Building and Genotyping Loci De Novo From Short-Read Sequences

(2011) Julian M. Catchen et al.   G3-Genes Genomes Genetics

Finished Genome of the Fungal Wheat Pathogen Mycosphaerella graminicola Reveals Dispensome Structure, Chromosome Plasticity, and Stealth Pathogenesis

(2011) Stephen B. Goodwin et al.   PLoS Genetics

Genomic Analysis of the Necrotrophic Fungal Pathogens Sclerotinia sclerotiorum and Botrytis cinerea

(2011) Joelle Amselem et al.   PLoS Genetics

Phytophthora sojae Avirulence Effector Avr3b is a Secreted NADH and ADP-ribose Pyrophosphorylase that Modulates Plant Immunity

(2011) Suomeng Dong et al.   PLoS Pathogens

Analyses of genome architecture and gene expression reveal novel candidate virulence factors in the secretome of Phytophthora infestans

(2010) Sylvain Raffaele et al.   BMC GENOMICS

Genetic Interference: Dont Stand So Close to Me

(2010) Luke Berchowitz et al.   CURRENT GENOMICS

A genomic map enriched for markers linked to Avr1 in Cronartium quercuum f.sp. fusiforme

(2010) Thomas L. Kubisiak et al.   FUNGAL GENETICS AND BIOLOGY

Co-evolutionary interactions between host resistance and pathogen effector genes in flax rust disease

(2010) MICHAEL RAVENSDALE et al.   MOLECULAR PLANT PATHOLOGY

Genome size variation in the pine fusiform rust pathogen Cronartium quercuum f.sp. fusiforme as determined by flow cytometry

(2010) Claire L. Anderson et al.   MYCOLOGIA

The Uniqueness of the Soybean Rust Pathosystem: An Improved Understanding of the Risk in Different Regions of the World

(2010) X. Li et al.   PLANT DISEASE

Centromeres Convert but Don't Cross

(2010) Paul B. Talbert et al.   PLOS BIOLOGY

Goldacre paper: Recognition events and host–pathogen co-evolution in gene-for-gene resistance to flax rust

(2009) Peter Dodds et al.   FUNCTIONAL PLANT BIOLOGY

Every genome sequence needs a good map

(2009) H. A. Lewin et al.   GENOME RESEARCH

Diversity and Evolution of Effector Loci in Natural Populations of the Plant Pathogen Melampsora lini

(2009) L. G. Barrett et al.   MOLECULAR BIOLOGY AND EVOLUTION

Relationships between rust resistance genes at theMlocus in flax

(2009) GREGORY J. LAWRENCE et al.   MOLECULAR PLANT PATHOLOGY

Emerging Concepts in Effector Biology of Plant-Associated Organisms

(2009) Saskia A. Hogenhout et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Meiotic crossover number and distribution are regulated by a dosage compensation protein that resembles a condensin subunit

(2008) C. J. Tsai et al.   GENES & DEVELOPMENT

A high-density SNP-based linkage map of the chicken genome reveals sequence features correlated with recombination rate

(2008) M. A.M. Groenen et al.   GENOME RESEARCH

High-resolution mapping of meiotic crossovers and non-crossovers in yeast

(2008) Eugenio Mancera et al.   NATURE

Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers

(2008) Nathan A. Baird et al.   PLoS One

Efficient and Accurate Construction of Genetic Linkage Maps from the Minimum Spanning Tree of a Graph

(2008) Yonghui Wu et al.   PLoS Genetics

Plant reproductive systems and evolution during biological invasion

(2007) SPENCER C. H. BARRETT et al.   MOLECULAR ECOLOGY