Long read and single molecule DNA sequencing simplifies genome assembly and TAL effector gene analysis of Xanthomonas translucens
出版年份 2016 全文链接
标题
Long read and single molecule DNA sequencing simplifies genome assembly and TAL effector gene analysis of Xanthomonas translucens
作者
关键词
Bacterial leaf streak, <em class=EmphasisTypeItalic >X. translucens</em>, PacBio, TAL effectors
出版物
BMC GENOMICS
Volume 17, Issue 1, Pages -
出版商
Springer Nature
发表日期
2016-01-05
DOI
10.1186/s12864-015-2348-9
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- One chromosome, one contig: complete microbial genomes from long-read sequencing and assembly
- (2015) Sergey Koren et al. CURRENT OPINION IN MICROBIOLOGY
- Successful test launch for nanopore sequencing
- (2015) Nicholas J Loman et al. NATURE METHODS
- Genetic engineering of theXa10promoter for broad-spectrum and durable resistance toXanthomonas oryzaepv.oryzae
- (2015) Xuan Zeng et al. PLANT BIOTECHNOLOGY JOURNAL
- Gene targeting by the TAL effector PthXo2 reveals cryptic resistance gene for bacterial blight of rice
- (2015) Junhui Zhou et al. PLANT JOURNAL
- A Potential Disease Susceptibility Gene CsLOB of Citrus Is Targeted by a Major Virulence Effector PthA of Xanthomonas citri subsp. citri
- (2014) Zheng Li et al. Molecular Plant
- Xanthomonas axonopodis Virulence Is Promoted by a Transcription Activator-Like Effector–Mediated Induction of a SWEET Sugar Transporter in Cassava
- (2014) Megan Cohn et al. MOLECULAR PLANT-MICROBE INTERACTIONS
- MinION nanopore sequencing identifies the position and structure of a bacterial antibiotic resistance island
- (2014) Philip M Ashton et al. NATURE BIOTECHNOLOGY
- Lateral organ boundaries 1 is a disease susceptibility gene for citrus bacterial canker disease
- (2014) Y. Hu et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Code-Assisted Discovery of TAL Effector Targets in Bacterial Leaf Streak of Rice Reveals Contrast with Bacterial Blight and a Novel Susceptibility Gene
- (2014) Raul A. Cernadas et al. PLoS Pathogens
- The noncanonical type III secretion system ofXanthomonas translucenspv.graminisis essential for forage grass infection
- (2013) Fabienne Wichmann et al. MOLECULAR PLANT PATHOLOGY
- Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
- (2013) Chen-Shan Chin et al. NATURE METHODS
- The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)
- (2013) Ross Overbeek et al. NUCLEIC ACIDS RESEARCH
- Hybrid error correction and de novo assembly of single-molecule sequencing reads
- (2012) Sergey Koren et al. NATURE BIOTECHNOLOGY
- Genome-wide mapping of methylated adenine residues in pathogenic Escherichia coli using single-molecule real-time sequencing
- (2012) Gang Fang et al. NATURE BIOTECHNOLOGY
- A hybrid approach for the automated finishing of bacterial genomes
- (2012) Ali Bashir et al. NATURE BIOTECHNOLOGY
- Addition of transcription activator-like effector binding sites to a pathogen strain-specific rice bacterial blight resistance gene makes it effective against additional strains and against bacterial leaf streak
- (2012) Aaron W. Hummel et al. NEW PHYTOLOGIST
- RNA-seq pinpoints a Xanthomonas TAL-effector activated resistance gene in a large-crop genome
- (2012) T. Strauss et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- High-throughput genomic sequencing of cassava bacterial blight strains identifies conserved effectors to target for durable resistance
- (2012) R. Bart et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Comparative genomics reveals diversity among xanthomonads infecting tomato and pepper
- (2011) Neha Potnis et al. BMC GENOMICS
- A framework for variation discovery and genotyping using next-generation DNA sequencing data
- (2011) Mark A DePristo et al. NATURE GENETICS
- Evolution and classification of the CRISPR–Cas systems
- (2011) Kira S. Makarova et al. NATURE REVIEWS MICROBIOLOGY
- Pathogenic and Genetic Diversity of Xanthomonas translucens pv. undulosa in North Dakota
- (2011) Tika B. Adhikari et al. PHYTOPATHOLOGY
- XanthomonasAvrBs3 Family-Type III Effectors: Discovery and Function
- (2010) Jens Boch et al. Annual Review of Phytopathology
- Fast and accurate long-read alignment with Burrows–Wheeler transform
- (2010) Heng Li et al. BIOINFORMATICS
- The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
- (2010) A. McKenna et al. GENOME RESEARCH
- The CRISPR/Cas bacterial immune system cleaves bacteriophage and plasmid DNA
- (2010) Josiane E. Garneau et al. NATURE
- CRISPR interference: RNA-directed adaptive immunity in bacteria and archaea
- (2010) Luciano A. Marraffini et al. NATURE REVIEWS GENETICS
- Rice xa13 Recessive Resistance to Bacterial Blight Is Defeated by Induction of the Disease Susceptibility Gene Os-11N3
- (2010) G. Antony et al. PLANT CELL
- The complete genome sequence of Xanthomonas albilineans provides new insights into the reductive genome evolution of the xylem-limited Xanthomonadaceae
- (2009) Isabelle Pieretti et al. BMC GENOMICS
- De novo assembly of human genomes with massively parallel short read sequencing
- (2009) R. Li et al. GENOME RESEARCH
- The type III effectors ofXanthomonas
- (2009) FRANK F. WHITE et al. MOLECULAR PLANT PATHOLOGY
- Sequencing technologies — the next generation
- (2009) Michael L. Metzker NATURE REVIEWS GENETICS
- Host and Pathogen Factors Controlling the Rice-Xanthomonas oryzae Interaction
- (2009) F. F. White et al. PLANT PHYSIOLOGY
- Breaking the Code of DNA Binding Specificity of TAL-Type III Effectors
- (2009) J. Boch et al. SCIENCE
- A Simple Cipher Governs DNA Recognition by TAL Effectors
- (2009) M. J. Moscou et al. SCIENCE
- A multilocus sequence analysis of the genus Xanthomonas
- (2008) J.M. Young et al. SYSTEMATIC AND APPLIED MICROBIOLOGY
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