Marker development using SLAF-seq and whole-genome shotgun strategy to fine-map the semi-dwarf gene ari-e in barley

Development of genome-wide InDel markers and their integration with SSR, DArT and SNP markers in single barley map

(2015) Gaofeng Zhou et al.   BMC GENOMICS

Molecular characterization and functional analysis of barley semi-dwarf mutant Riso no. 9265

(2015) Qiaojun Jia et al.   BMC GENOMICS

Characterization and fine mapping of a novel barley Stage Green-Revertible Albino Gene (HvSGRA) by Bulked Segregant Analysis based on SSR assay and Specific Length Amplified Fragment Sequencing

(2015) Dandan Qin et al.   BMC GENOMICS

The BarleyUniculme4Gene Encodes a BLADE-ON-PETIOLE-Like Protein That Controls Tillering and Leaf Patterning

(2015) Elahe Tavakol et al.   PLANT PHYSIOLOGY

Rapid Identification of Major QTLs Associated with Rice Grain Weight and Their Utilization

(2015) Feifei Xu et al.   PLoS One

Genetic mapping of the nulliplex-branch gene (gb_nb1) in cotton using next-generation sequencing

(2015) Wei Chen et al.   THEORETICAL AND APPLIED GENETICS

QTL mapping of cucumber fruit flesh thickness by SLAF-seq

(2015) Xuewen Xu et al.   Scientific Reports

An SNP-based saturated genetic map and QTL analysis of fruit-related traits in cucumber using specific-length amplified fragment (SLAF) sequencing

(2015) Qingzhen Wei et al.   BMC GENOMICS

An evaluation of genotyping by sequencing (GBS) to map the Breviaristatum-e (ari-e) locus in cultivated barley

(2014) Hui Liu et al.   BMC GENOMICS

Construction of a high-density genetic map based on large-scale markers developed by specific length amplified fragment sequencing (SLAF-seq) and its application to QTL analysis for isoflavone content in Glycine max

(2014) Bin Li et al.   BMC GENOMICS

Identification of a new maize inflorescence meristem mutant and association analysis using SLAF-seq method

(2014) Chao Xia et al.   EUPHYTICA

Mapping-by-sequencing accelerates forward genetics in barley

(2014) Martin Mascher et al.   GENOME BIOLOGY

Genome-wide InDel marker system for application in rice breeding and mapping studies

(2013) Dong-Hong Wu et al.   EUPHYTICA

Anchoring and ordering NGS contig assemblies by population sequencing (POPSEQ)

(2013) Martin Mascher et al.   PLANT JOURNAL

QTL-seq: rapid mapping of quantitative trait loci in rice by whole genome resequencing of DNA from two bulked populations

(2013) Hiroki Takagi et al.   PLANT JOURNAL

A Sequence-Ready Physical Map of Barley Anchored Genetically by Two Million Single-Nucleotide Polymorphisms

(2013) R. Ariyadasa et al.   PLANT PHYSIOLOGY

Arabidopsis semidwarfs evolved from independent mutations in GA20ox1, ortholog to green revolution dwarf alleles in rice and barley

(2013) L. Barboza et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Sequence-Based Mapping of the Polyploid Wheat Genome

(2013) Cyrille Saintenac et al.   G3-Genes Genomes Genetics

A collection of INDEL markers for map-based cloning in seven Arabidopsis accessions

(2012) Daniel Ioan Păcurar et al.   JOURNAL OF EXPERIMENTAL BOTANY

A SHORT INTERNODES (SHI) family transcription factor gene regulates awn elongation and pistil morphology in barley

(2012) Takahisa Yuo et al.   JOURNAL OF EXPERIMENTAL BOTANY

Genome sequencing reveals agronomically important loci in rice using MutMap

(2012) Akira Abe et al.   NATURE BIOTECHNOLOGY

Expression level of a gibberellin 20-oxidase gene is associated with multiple agronomic and quality traits in barley

(2011) Qiaojun Jia et al.   THEORETICAL AND APPLIED GENETICS

Gene and QTL detection in a three-way barley cross under selection by a mixed model with kinship information using SNPs

(2011) Marcos Malosetti et al.   THEORETICAL AND APPLIED GENETICS

Induction of breviaristatum mutants in barley

(2010) JIRI KUCERA et al.   HEREDITAS

A platform of high-density INDEL/CAPS markers for map-based cloning in Arabidopsis

(2010) Xianhui Hou et al.   PLANT JOURNAL

Genetic Dissection of Barley Morphology and Development

(2010) A. Druka et al.   PLANT PHYSIOLOGY

The CC-NB-LRR-Type Rdg2a Resistance Gene Confers Immunity to the Seed-Borne Barley Leaf Stripe Pathogen in the Absence of Hypersensitive Cell Death

(2010) Davide Bulgarelli et al.   PLoS One

Genome-wide association mapping to candidate polymorphism resolution in the unsequenced barley genome

(2010) J. Cockram et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

GA-20 oxidase as a candidate for the semidwarf gene sdw1/denso in barley

(2009) Qiaojun Jia et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Basal Host Resistance of Barley to Powdery Mildew: Connecting Quantitative Trait Loci and Candidate Genes

(2009) Reza Aghnoum et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Cleistogamous flowering in barley arises from the suppression of microRNA-guided HvAP2 mRNA cleavage

(2009) S. K. Nair et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The stem rust resistance gene Rpg5 encodes a protein with nucleotide-binding-site, leucine-rich, and protein kinase domains

(2008) R. Brueggeman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Barley grain with adhering hulls is controlled by an ERF family transcription factor gene regulating a lipid biosynthesis pathway

(2008) S. Taketa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA