Transcriptome analysis of the fungal pathogen Fusarium oxysporum f. sp. medicaginis during colonisation of resistant and susceptible Medicago truncatula hosts identifies differential pathogenicity profiles and novel candidate effectors
出版年份 2016 全文链接
标题
Transcriptome analysis of the fungal pathogen Fusarium oxysporum f. sp. medicaginis during colonisation of resistant and susceptible Medicago truncatula hosts identifies differential pathogenicity profiles and novel candidate effectors
作者
关键词
<em class=EmphasisTypeItalic >Fusarium</em> wilt, Vascular wilt, RNA-Seq, DEG, root pathogen, Necrotroph, Hemibiotroph, Effector, Secreted In Xylem, Small secreted protein
出版物
BMC GENOMICS
Volume 17, Issue 1, Pages -
出版商
Springer Nature
发表日期
2016-11-03
DOI
10.1186/s12864-016-3192-2
参考文献
相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。- Genomes and Transcriptomes of Partners in Plant-Fungal- Interactions between Canola (Brassica napus) and Two Leptosphaeria Species
- (2017) Rohan G. T. Lowe et al. PLoS One
- Comparative genomics and prediction of conditionally dispensable sequences in legume–infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors
- (2016) Angela H. Williams et al. BMC GENOMICS
- Exchange of core chromosomes and horizontal transfer of lineage-specific chromosomes in Fusarium oxysporum
- (2016) Ido Vlaardingerbroek et al. ENVIRONMENTAL MICROBIOLOGY
- Identification of pathogenicity-related genes inFusarium oxysporumf. sp.cepae
- (2016) Andrew Taylor et al. MOLECULAR PLANT PATHOLOGY
- Dispensable chromosomes inFusarium oxysporumf. sp.lycopersici
- (2016) Ido Vlaardingerbroek et al. MOLECULAR PLANT PATHOLOGY
- Erratum: Survival trade-offs in plant roots during colonization by closely related beneficial and pathogenic fungi
- (2016) Stéphane Hacquard et al. Nature Communications
- Transcriptome Profiling of Resistance to Fusarium oxysporum f. sp. conglutinans in Cabbage (Brassica oleracea) Roots
- (2016) Miaomiao Xing et al. PLoS One
- Fungal Effectors and Plant Susceptibility
- (2015) Libera Lo Presti et al. Annual Review of Plant Biology
- Transcriptome profiling of soybean (Glycine max) roots challenged with pathogenic and non-pathogenic isolates of Fusarium oxysporum
- (2015) Alessandra Lanubile et al. BMC GENOMICS
- Fungal chitinases: function, regulation, and potential roles in plant/pathogen interactions
- (2015) Thorsten Langner et al. CURRENT GENETICS
- Genome-Wide Analysis in Three Fusarium Pathogens Identifies Rapidly Evolving Chromosomes and Genes Associated with Pathogenicity
- (2015) Jana Sperschneider et al. Genome Biology and Evolution
- Combined action of the major secreted exo- and endopolygalacturonases is required for full virulence of F usarium oxysporum
- (2015) Gustavo Bravo Ruiz et al. MOLECULAR PLANT PATHOLOGY
- Synergistic Action of a Metalloprotease and a Serine Protease fromFusarium oxysporumf. sp.lycopersiciCleaves Chitin-Binding Tomato Chitinases, Reduces Their Antifungal Activity, and Enhances Fungal Virulence
- (2015) Mansoor Karimi Jashni et al. MOLECULAR PLANT-MICROBE INTERACTIONS
- Comparative genomics of Fusarium oxysporum f. sp. melonis reveals the secreted protein recognized by the Fom-2 resistance gene in melon
- (2015) Sarah Maria Schmidt et al. NEW PHYTOLOGIST
- Effector P: predicting fungal effector proteins from secretomes using machine learning
- (2015) Jana Sperschneider et al. NEW PHYTOLOGIST
- TheAVR2-SIX5gene pair is required to activateI-2-mediated immunity in tomato
- (2015) Lisong Ma et al. NEW PHYTOLOGIST
- Understanding pea resistance mechanisms in response to Fusarium oxysporum through proteomic analysis
- (2015) María Ángeles Castillejo et al. PHYTOCHEMISTRY
- Fusarium oxysporumf. sp.canariensis: evidence for horizontal gene transfer of putative pathogenicity genes
- (2015) M. H. Laurence et al. PLANT PATHOLOGY
- Differentially Expressed Genes in Resistant and Susceptible Common Bean (Phaseolus vulgaris L.) Genotypes in Response to Fusarium oxysporum f. sp. phaseoli
- (2015) Renfeng Xue et al. PLoS One
- Resistance reaction of Medicago truncatula genotypes to Fusarium oxysporum: effect of plant age, substrate and inoculation method
- (2015) Nicolas Rispail et al. Crop & Pasture Science
- Systematic analyses reveal uniqueness and origin of the CFEM domain in fungi
- (2015) Zhen-Na Zhang et al. Scientific Reports
- Cerato-platanin family proteins: one function for multiple biological roles?
- (2015) Ivan Baccelli Frontiers in Plant Science
- Fusarium oxysporum Triggers Tissue-Specific Transcriptional Reprogramming in Arabidopsis thaliana
- (2015) Rebecca Lyons et al. PLoS One
- Investigating the Association between Flowering Time and Defense in the Arabidopsis thaliana-Fusarium oxysporum Interaction
- (2015) Rebecca Lyons et al. PLoS One
- Plant Cell Wall–Degrading Enzymes and Their Secretion in Plant-Pathogenic Fungi
- (2014) Christian P. Kubicek et al. Annual Review of Phytopathology
- Analysis of root proteome unravels differential molecular responses during compatible and incompatible interaction between chickpea (Cicer arietinum L.) and Fusarium oxysporum f. sp. ciceri Race1 (Foc1)
- (2014) Moniya Chatterjee et al. BMC GENOMICS
- Horizontal chromosome transfer and rational strategies to manage Fusarium vascular wilt diseases
- (2014) Li-Jun Ma MOLECULAR PLANT PATHOLOGY
- Cerato-platanins: Elicitors and effectors
- (2014) Luigia Pazzagli et al. PLANT SCIENCE
- Genome and Transcriptome Analysis of the Fungal Pathogen Fusarium oxysporum f. sp. cubense Causing Banana Vascular Wilt Disease
- (2014) Lijia Guo et al. PLoS One
- Unconventionally secreted effectors of two filamentous pathogens target plant salicylate biosynthesis
- (2014) Tingli Liu et al. Nature Communications
- Comparative analysis of fungal genomes reveals different plant cell wall degrading capacity in fungi
- (2013) Zhongtao Zhao et al. BMC GENOMICS
- Analysis of banana transcriptome and global gene expression profiles in banana roots in response to infection by race 1 and tropical race 4 of Fusarium oxysporum f. sp. cubense
- (2013) Chunqiang Li et al. BMC GENOMICS
- MITEs in the promoters of effector genes allow prediction of novel virulence genes in Fusarium oxysporum
- (2013) Sarah M Schmidt et al. BMC GENOMICS
- Understanding the molecular defence responses of host during chickpea–Fusarium interplay: where do we stand?
- (2013) Sumanti Gupta et al. FUNCTIONAL PLANT BIOLOGY
- Extensive chromosomal reshuffling drives evolution of virulence in an asexual pathogen
- (2013) R. de Jonge et al. GENOME RESEARCH
- The Fusarium oxysporum Effector Six6 Contributes to Virulence and Suppresses I-2-Mediated Cell Death
- (2013) F. Gawehns et al. MOLECULAR PLANT-MICROBE INTERACTIONS
- Identification of Sources of Quantitative Resistance toFusarium oxysporumf. sp.medicaginisinMedicago truncatula
- (2013) N. Rispail et al. PLANT DISEASE
- Transcriptome and Expression Profile Analysis of Highly Resistant and Susceptible Banana Roots Challenged with Fusarium oxysporum f. sp. cubense Tropical Race 4
- (2013) Ting-Ting Bai et al. PLoS One
- LysM Effectors: Secreted Proteins Supporting Fungal Life
- (2013) Anja Kombrink et al. PLoS Pathogens
- TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
- (2013) Daehwan Kim et al. GENOME BIOLOGY
- Transcriptome profiling of resistant and susceptible Cavendish banana roots following inoculation with Fusarium oxysporum f. sp. cubense tropical race 4
- (2012) Chun-yu Li et al. BMC GENOMICS
- Optimizing illumina next-generation sequencing library preparation for extremely at-biased genomes
- (2012) Samuel O Oyola et al. BMC GENOMICS
- Characterization of the defense transcriptome responsive to Fusarium oxysporum-infection in Arabidopsis using RNA-seq
- (2012) Qian-Hao Zhu et al. GENE
- Lifestyle transitions in plant pathogenic Colletotrichum fungi deciphered by genome and transcriptome analyses
- (2012) Richard J O'Connell et al. NATURE GENETICS
- Distinct colonization patterns and cDNA-AFLP transcriptome profiles in compatible and incompatible interactions between melon and different races of Fusarium oxysporum f. sp. melonis
- (2011) Sara Sestili et al. BMC GENOMICS
- The GH18 family of chitinases: Their domain architectures, functions and evolutions
- (2011) Qian-Sheng Huang et al. GLYCOBIOLOGY
- A Highly Conserved Effector in Fusarium oxysporum Is Required for Full Virulence on Arabidopsis
- (2011) Louise F. Thatcher et al. MOLECULAR PLANT-MICROBE INTERACTIONS
- Integrative genomics viewer
- (2011) James T Robinson et al. NATURE BIOTECHNOLOGY
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
- The arms race between tomato andFusarium oxysporum
- (2010) FRANK TAKKEN et al. MOLECULAR PLANT PATHOLOGY
- Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium
- (2010) Li-Jun Ma et al. NATURE
- Conserved Fungal LysM Effector Ecp6 Prevents Chitin-Triggered Immunity in Plants
- (2010) R. de Jonge et al. SCIENCE
- Fungal Effector Proteins
- (2009) Ioannis Stergiopoulos et al. Annual Review of Phytopathology
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
- (2009) M. D. Robinson et al. BIOINFORMATICS
- Comparative analyses of genotype dependent expressed sequence tags and stress-responsive transcriptome of chickpea wilt illustrates predicted and unexpected genes and novel regulators of plant immunity
- (2009) Nasheeman Ashraf et al. BMC GENOMICS
- A study on the susceptibility of the model legume plant Medicago truncatula to the soil-borne pathogen Fusarium oxysporum
- (2009) Montserrat Ramírez-Suero et al. EUROPEAN JOURNAL OF PLANT PATHOLOGY
- Pathogen profile update:Fusarium oxysporum
- (2009) CAROLINE B. MICHIELSE et al. MOLECULAR PLANT PATHOLOGY
- The effector protein Avr2 of the xylem-colonizing fungusFusarium oxysporumactivates the tomato resistance protein I-2 intracellularly
- (2009) Petra M. Houterman et al. PLANT JOURNAL
- The Nuclear Protein Sge1 of Fusarium oxysporum Is Required for Parasitic Growth
- (2009) Caroline B. Michielse et al. PLoS Pathogens
- Insight into the molecular requirements for pathogenicity of Fusarium oxysporum f. sp. lycopersici through large-scale insertional mutagenesis
- (2009) Caroline B Michielse et al. GENOME BIOLOGY
- Expression of effector gene SIX1 of Fusarium oxysporum requires living plant cells
- (2008) H. Charlotte van der Does et al. FUNGAL GENETICS AND BIOLOGY
- The novelCladosporium fulvumlysin motif effector Ecp6 is a virulence factor with orthologues in other fungal species
- (2008) Melvin D. Bolton et al. MOLECULAR MICROBIOLOGY
- Suppression of Plant Resistance Gene-Based Immunity by a Fungal Effector
- (2008) Petra M. Houterman et al. PLoS Pathogens
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now