Identification of a Latin American-specific BabA adhesin variant through whole genome sequencing of Helicobacter pylori patient isolates from Nicaragua

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

A Role for the Vacuolating Cytotoxin, VacA, in Colonization and Helicobacter pylori–Induced Metaplasia in the Stomach

(2014) Jody A. Winter et al.   JOURNAL OF INFECTIOUS DISEASES

Comparative genomic analysis of Helicobacter pylori from Malaysia identifies three distinct lineages suggestive of differential evolution

(2014) Narender Kumar et al.   NUCLEIC ACIDS RESEARCH

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins

(2014) Nicholas J. Croucher et al.   NUCLEIC ACIDS RESEARCH

Dynamics of Lewis b Binding and Sequence Variation of the babA Adhesin Gene during Chronic Helicobacter pylori Infection in Humans

(2014) Sandra Nell et al.   mBio

Expression, purification and X-ray crystallographic analysis of theHelicobacter pyloriblood group antigen-binding adhesin BabA

(2014) Suresh Subedi et al.   Acta Crystallographica Section F-Structural Biology Communications

QUAST: quality assessment tool for genome assemblies

(2013) Alexey Gurevich et al.   BIOINFORMATICS

BayesHammer: Bayesian clustering for error correction in single-cell sequencing

(2013) Sergey I Nikolenko et al.   BMC GENOMICS

Pathology of Gastric Cancer and Its Precursor Lesions

(2013) Evgeny Yakirevich et al.   GASTROENTEROLOGY CLINICS OF NORTH AMERICA

Comparative Analysis of the Full Genome of Helicobacter pylori Isolate Sahul64 Identifies Genes of High Divergence

(2013) W. Lu et al.   JOURNAL OF BACTERIOLOGY

The Three-dimensional Structure of the Extracellular Adhesion Domain of the Sialic Acid-binding Adhesin SabA fromHelicobacter pylori

(2013) Siew Siew Pang et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Achieving self-sufficiency of red blood cells based on universal voluntary blood donation in Latin America. The case of Nicaragua

(2013) René Berrios et al.   TRANSFUSION AND APHERESIS SCIENCE

snpTree - a web-server to identify and construct SNP trees from whole genome sequence data

(2012) Pimlapas Leekitcharoenphon et al.   BMC GENOMICS

Epidemiology of Helicobacter pylori infection in six Latin American countries (SWOG Trial S0701)

(2012) Carolina Porras et al.   CANCER CAUSES & CONTROL

Genome-Wide Survey of Mutual Homologous Recombination in a Highly Sexual Bacterial Species

(2012) Koji Yahara et al.   Genome Biology and Evolution

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Human Gastric Mucins Differently Regulate Helicobacter pylori Proliferation, Gene Expression and Interactions with Host Cells

(2012) Emma C. Skoog et al.   PLoS One

Socioeconomic and Nutritional Factors Account for the Association of Gastric Cancer with Amerindian Ancestry in a Latin American Admixed Population

(2012) Latife Pereira et al.   PLoS One

Clinical relevance of cagA and vacA gene polymorphisms in Helicobacter pylori isolates from Senegalese patients

(2011) S. Breurec et al.   CLINICAL MICROBIOLOGY AND INFECTION

Phylogeographic origin of Helicobacter pylori is a determinant of gastric cancer risk

(2011) T. de Sablet et al.   GUT

Pathogenesis of Helicobacter pylori Infection

(2011) Steffen Backert et al.   HELICOBACTER

Molecular epidemiology, population genetics, and pathogenic role of Helicobacter pylori

(2011) Rumiko Suzuki et al.   INFECTION GENETICS AND EVOLUTION

BabA-mediated Adherence Is a Potentiator of theHelicobacter pyloriType IV Secretion System Activity

(2011) Nozomi Ishijima et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Gastric carcinogenesis

(2011) Jan Bornschein et al.   LANGENBECKS ARCHIVES OF SURGERY

Helicobacter pylori Genotyping from American Indigenous Groups Shows Novel Amerindian vacA and cagA Alleles and Asian, African and European Admixture

(2011) Margarita Camorlinga-Ponce et al.   PLoS One

Helicobacter pylori genome evolution during human infection

(2011) L. Kennemann et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data

(2010) Murray P Cox et al.   BMC BIOINFORMATICS

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

Helicobacter pylori from Peruvian Amerindians: Traces of Human Migrations in Strains from Remote Amazon, and Genome Sequence of an Amerind Strain

(2010) Dangeruta Kersulyte et al.   PLoS One

A Global Overview of the Genetic and Functional Diversity in the Helicobacter pylori cag Pathogenicity Island

(2010) Patrick Olbermann et al.   PLoS Genetics

Failure To Detect Helicobacter pylori DNA in Drinking and Environmental Water in Dhaka, Bangladesh, Using Highly Sensitive Real-Time PCR Assays

(2009) A. Janzon et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix

(2009) M. N. Price et al.   MOLECULAR BIOLOGY AND EVOLUTION

SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building

(2009) M. Gouy et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Peopling of the Pacific from a Bacterial Perspective

(2009) Y. Moodley et al.   SCIENCE

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH