Multigene phylogenetic analysis redefines dung beetles relationships and classification (Coleoptera: Scarabaeidae: Scarabaeinae)

Phylogeny of the Oniticellini and Onthophagini dung beetles (Scarabaeidae, Scarabaeinae) from morphological evidence

(2016) T. Keith Philips   ZooKeys

If Dung Beetles (Scarabaeidae: Scarabaeinae) Arose in Association with Dinosaurs, Did They Also Suffer a Mass Co-Extinction at the K-Pg Boundary?

(2016) Nicole L. Gunter et al.   PLoS One

Innovative Bayesian and Parsimony Phylogeny of Dung Beetles (Coleoptera, Scarabaeidae, Scarabaeinae) Enhanced by Ontology-Based Partitioning of Morphological Characters

(2015) Sergei Tarasov et al.   PLoS One

InterProScan 5: genome-scale protein function classification

(2014) P. Jones et al.   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Selecting optimal partitioning schemes for phylogenomic datasets

(2014) Robert Lanfear et al.   BMC EVOLUTIONARY BIOLOGY

POY version 5: phylogenetic analysis using dynamic homologies under multiple optimality criteria

(2014) Ward C. Wheeler et al.   CLADISTICS

ExaBayes: Massively Parallel Bayesian Tree Inference for the Whole-Genome Era

(2014) Andre J. Aberer et al.   MOLECULAR BIOLOGY AND EVOLUTION

The InterPro protein families database: the classification resource after 15 years

(2014) Alex Mitchell et al.   NUCLEIC ACIDS RESEARCH

The evolution of scarab beetles tracks the sequential rise of angiosperms and mammals

(2014) D. Ahrens et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Competitive Release Leads to Range Expansion and Rampant Speciation in Malagasy Dung Beetles

(2014) Andreia Miraldo et al.   SYSTEMATIC BIOLOGY

Predictive Approaches to Assessing the Fit of Evolutionary Models

(2014) Jeremy M. Brown   SYSTEMATIC BIOLOGY

Detection of Implausible Phylogenetic Inferences Using Posterior Predictive Assessment of Model Fit

(2014) Jeremy M. Brown   SYSTEMATIC BIOLOGY

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Affinities of the Canthonini dung beetles of the Eastern Arc Mountains

(2013) Sukoluhle Mlambo et al.   ORGANISMS DIVERSITY & EVOLUTION

Molecular phylogeny of the beetle tribe Oxypodini (Coleoptera: Staphylinidae: Aleocharinae)

(2013) JUDITH OSSWALD et al.   SYSTEMATIC ENTOMOLOGY

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

Robustness of Compound Dirichlet Priors for Bayesian Inference of Branch Lengths

(2012) Chi Zhang et al.   SYSTEMATIC BIOLOGY

Phylogenetic Inference via Sequential Monte Carlo

(2012) Alexandre Bouchard-Côté et al.   SYSTEMATIC BIOLOGY

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

Phylogeny of the Coleoptera Based on Morphological Characters of Adults and Larvae

(2011) John F. Lawrence et al.   ANNALES ZOOLOGICI

Evolutionary and biogeographical history of an ancient and global group of arachnids (Arachnida: Opiliones: Cyphophthalmi) with a new taxonomic arrangement

(2011) GONZALO GIRIBET et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Phylogenetic analyses reveal reliable morphological markers to classify mega-diversity in Onthophagini dung beetles (Coleoptera: Scarabaeidae: Scarabaeinae)

(2011) Sergey I. Tarasov et al.   CLADISTICS

Tail Paradox, Partial Identifiability, and Influential Priors in Bayesian Branch Length Inference

(2011) B. Rannala et al.   MOLECULAR BIOLOGY AND EVOLUTION

Evolutionary Constraints in Hind Wing Shape in Chinese Dung Beetles (Coleoptera: Scarabaeinae)

(2011) Ming Bai et al.   PLoS One

Family-Group Names In Coleoptera (Insecta)

(2011) Patrice Bouchard et al.   ZooKeys

A problem in POY tree searches (and its work-around) when some sequences are observed to be absent in some terminals

(2010) Jan De Laet   CLADISTICS

Three parallel radiations of Canthonini dung beetles in Madagascar

(2010) Helena Wirta et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Did dung beetles arise in Africa? A phylogenetic hypothesis based on five gene regions

(2010) Catherine L. Sole et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Freiburg RNA Tools: a web server integrating INTARNA, EXPARNA and LOCARNA

(2010) C. Smith et al.   NUCLEIC ACIDS RESEARCH

Toward reconstructing the evolution of advanced moths and butterflies (Lepidoptera: Ditrysia): an initial molecular study

(2009) Jerome C Regier et al.   BMC EVOLUTIONARY BIOLOGY

When Trees Grow Too Long: Investigating the Causes of Highly Inaccurate Bayesian Branch-Length Estimates

(2009) Jeremy M. Brown et al.   SYSTEMATIC BIOLOGY

PuMA: Bayesian analysis of partitioned (and unpartitioned) model adequacy

(2008) J. M. Brown et al.   BIOINFORMATICS

Ecological functions and ecosystem services provided by Scarabaeinae dung beetles

(2008) E. Nichols et al.   BIOLOGICAL CONSERVATION

RNAalifold: improved consensus structure prediction for RNA alignments

(2008) Stephan H Bernhart et al.   BMC BIOINFORMATICS

An old adaptive radiation of forest dung beetles in Madagascar

(2008) Helena Wirta et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Evaluating nuclear protein-coding genes for phylogenetic utility in beetles

(2008) Alexander L. Wild et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

A Phylogenomic Study of Birds Reveals Their Evolutionary History

(2008) S. J. Hackett et al.   SCIENCE

Efficiency of Markov Chain Monte Carlo Tree Proposals in Bayesian Phylogenetics

(2008) Clemens Lakner et al.   SYSTEMATIC BIOLOGY

Toward monitoring global biodiversity

(2008) Jonathan E. M. Baillie et al.   Conservation Letters