Models for gene duplication when dosage balance works as a transition state to subsequent neo- or sub-functionalization

A generalized birth and death process for modeling the fates of gene duplication

(2015) Jing Zhao et al.   BMC EVOLUTIONARY BIOLOGY

What Fraction of Duplicates Observed in Recently Sequenced Genomes Is Segregating and Destined to Fail to Fix?

(2015) Ashley I. Teufel et al.   Genome Biology and Evolution

DEoptim: AnRPackage for Global Optimization by Differential Evolution

(2015) Katharine Mullen et al.   Journal of Statistical Software

Dosage, duplication, and diploidization: clarifying the interplay of multiple models for duplicate gene evolution over time

(2014) Gavin C Conant et al.   CURRENT OPINION IN PLANT BIOLOGY

The generalized time variable reconstructed birth–death process

(2012) Nathaniel Hallinan   JOURNAL OF THEORETICAL BIOLOGY

Gene balance hypothesis: Connecting issues of dosage sensitivity across biological disciplines

(2012) J. A. Birchler et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Toward a General Model for the Evolutionary Dynamics of Gene Duplicates

(2011) Anke Konrad et al.   Genome Biology and Evolution

Binding constraints on the evolution of enzymes and signalling proteins: the important role of negative pleiotropy

(2011) D. A. Liberles et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The evolution of gene duplications: classifying and distinguishing between models

(2010) Hideki Innan et al.   NATURE REVIEWS GENETICS

Plasticity of Animal Genome Architecture Unmasked by Rapid Evolution of a Pelagic Tunicate

(2010) F. Denoeud et al.   SCIENCE

The gene evolution model and computing its associated probabilities

(2009) Lars Arvestad et al.   JOURNAL OF THE ACM

Cellular reactions to gene dosage imbalance: genomic, transcriptomic and proteomic effects

(2008) Reiner A. Veitia et al.   TRENDS IN GENETICS