Circadian Regulation of the Plant Transcriptome Under Natural Conditions

QTL Underlying Circadian Clock Parameters Under Seasonally Variable Field Settings in Arabidopsis thaliana

(2019) Matthew J. Rubin et al.   G3-Genes Genomes Genetics

Continuous dynamic adjustment of the plant circadian oscillator

(2019) Alex A. R. Webb et al.   Nature Communications

Multi-level Modulation of Light Signaling by GIGANTEA Regulates Both the Output and Pace of the Circadian Clock

(2019) Maria A. Nohales et al.   DEVELOPMENTAL CELL

Casein kinase 1 family regulates PRR5 and TOC1 in the Arabidopsis circadian clock

(2019) Takahiro N. Uehara et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Plant circadian rhythms regulate the effectiveness of a glyphosate-based herbicide

(2019) Fiona E. Belbin et al.   Nature Communications

Circadian Waves of Transcriptional Repression Shape PIF-Regulated Photoperiod-Responsive Growth in Arabidopsis

(2018) Guiomar Martín et al.   CURRENT BIOLOGY

Rapid and dynamic alternative splicing impacts the Arabidopsis cold response transcriptome

(2018) Cristiane P G Calixto et al.   PLANT CELL

Absence of warmth permits epigenetic memory of winter in Arabidopsis

(2018) Jo Hepworth et al.   Nature Communications

Circadian Entrainment in Arabidopsis by the Sugar-Responsive Transcription Factor bZIP63

(2018) Alexander Frank et al.   CURRENT BIOLOGY

Circadian control of abscisic acid biosynthesis and signalling pathways revealed by genome-wide analysis of LHY binding targets

(2018) Sally Adams et al.   NEW PHYTOLOGIST

Calcium Signaling-Linked CBF/DREB1 Gene Expression was Induced Depending on the Temperature Fluctuation in the Field: Views from the Natural Condition of Cold Acclimation

(2018) Hayato Hiraki et al.   PLANT AND CELL PHYSIOLOGY

Daily humidity oscillation regulates the circadian clock to influence plant physiology

(2018) Musoki Mwimba et al.   Nature Communications

Fitness consequences of a clock pollinator filter in Nicotiana attenuata flowers in nature

(2017) Felipe Yon et al.   Journal of Integrative Plant Biology

Fitness consequences of altering floral circadian oscillations forNicotiana attenuata

(2017) Felipe Yon et al.   Journal of Integrative Plant Biology

Circadian clock component, LHY, tells a plant when to respond photosynthetically to light in nature

(2017) Youngsung Joo et al.   Journal of Integrative Plant Biology

PHYTOCHROME INTERACTING FACTORS mediate metabolic control of the circadian system in Arabidopsis

(2017) Ekaterina Shor et al.   NEW PHYTOLOGIST

Shining a light on the Arabidopsis circadian clock

(2017) Rachael J. Oakenfull et al.   PLANT CELL AND ENVIRONMENT

The metabolic sensor AKIN10 modulates the Arabidopsis circadian clock in a light-dependent manner

(2017) Jieun Shin et al.   PLANT CELL AND ENVIRONMENT

Importance of Fluctuations in Light on Plant Photosynthetic Acclimation

(2017) Silvere Vialet-Chabrand et al.   PLANT PHYSIOLOGY

The Intracellular Dynamics of Circadian Clocks Reach for the Light of Ecology and Evolution

(2016) Andrew J. Millar   Annual Review of Plant Biology

Pampered inside, pestered outside? Differences and similarities between plants growing in controlled conditions and in the field

(2016) Hendrik Poorter et al.   NEW PHYTOLOGIST

Mechanism and regulation of the nonsense-mediated decay pathway

(2016) Nele Hug et al.   NUCLEIC ACIDS RESEARCH

Improvement of Arabidopsis Biomass and Cold, Drought and Salinity Stress Tolerance by Modified Circadian Clock-Associated PSEUDO-RESPONSE REGULATORs

(2016) Norihito Nakamichi et al.   PLANT AND CELL PHYSIOLOGY

Direct Repression of Evening Genes by CIRCADIAN CLOCK-ASSOCIATED1 in the Arabidopsis Circadian Clock

(2016) Mari Kamioka et al.   PLANT CELL

Circadian regulation of sunflower heliotropism, floral orientation, and pollinator visits

(2016) Hagop S. Atamian et al.   SCIENCE

Into the Evening: Complex Interactions in the Arabidopsis Circadian Clock

(2016) He Huang et al.   TRENDS IN GENETICS

Alternative Splicing of Barley Clock Genes in Response to Low Temperature

(2016) Cristiane P. G. Calixto et al.   PLoS One

Photoperiodic Flowering: Time Measurement Mechanisms in Leaves

(2015) Young Hun Song et al.   Annual Review of Plant Biology

Environmental Stresses Modulate Abundance and Timing of Alternatively Spliced Circadian Transcripts in Arabidopsis

(2015) Sergei A. Filichkin et al.   Molecular Plant

Circadian Clock Genes Universally Control Key Agricultural Traits

(2015) Claire Bendix et al.   Molecular Plant

The pineapple genome and the evolution of CAM photosynthesis

(2015) Ray Ming et al.   NATURE GENETICS

Domestication selected for deceleration of the circadian clock in cultivated tomato

(2015) Niels A Müller et al.   NATURE GENETICS

SilencingNicotiana attenuata LHYandZTLalters circadian rhythms in flowers

(2015) Felipe Yon et al.   NEW PHYTOLOGIST

Punctual Transcriptional Regulation by the Rice Circadian Clock under Fluctuating Field Conditions

(2015) Jun Matsuzaki et al.   PLANT CELL

A G-Box-Like Motif Is Necessary for Transcriptional Regulation by Circadian Pseudo-Response Regulators in Arabidopsis

(2015) Tiffany L. Liu et al.   PLANT PHYSIOLOGY

The spliceosome assembly factor GEMIN2 attenuates the effects of temperature on alternative splicing and circadian rhythms

(2015) Rubén Gustavo Schlaen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Allelic polymorphism ofGIGANTEAis responsible for naturally occurring variation in circadian period inBrassica rapa

(2015) Qiguang Xie et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome-wide identification of CCA1 targets uncovers an expanded clock network inArabidopsis

(2015) Dawn H. Nagel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Circadian rhythms and post-transcriptional regulation in higher plants

(2015) Andrés Romanowski et al.   Frontiers in Plant Science

Genome-wide quantification of homeolog expression ratio revealed nonstochastic gene regulation in synthetic allopolyploid Arabidopsis

(2014) Satoru Akama et al.   NUCLEIC ACIDS RESEARCH

The EC Night-Time Repressor Plays a Crucial Role in Modulating Circadian Clock Transcriptional Circuitry by Conservatively Double-Checking Both Warm-Night and Night-Time-Light Signals in a Synergistic Manner in Arabidopsis thaliana

(2014) Takeshi Mizuno et al.   PLANT AND CELL PHYSIOLOGY

Adaptation to the Local Environment by Modifications of the Photoperiod Response in Crops

(2014) Norihito Nakamichi   PLANT AND CELL PHYSIOLOGY

Turning heads: The biology of solar tracking in sunflower

(2014) Joshua P. Vandenbrink et al.   PLANT SCIENCE

The Brassica oleracea genome reveals the asymmetrical evolution of polyploid genomes

(2014) Shengyi Liu et al.   Nature Communications

The PRR family of transcriptional regulators reflects the complexity and evolution of plant circadian clocks

(2013) Eva M Farré et al.   CURRENT OPINION IN PLANT BIOLOGY

Network balance via CRY signalling controls the Arabidopsis circadian clock over ambient temperatures

(2013) P. D. Gould et al.   Molecular Systems Biology

Photosynthetic entrainment of the Arabidopsis thaliana circadian clock

(2013) Michael J. Haydon et al.   NATURE

The circadian clock has transient plasticity of period and is required for timing of nocturnal processes in Arabidopsis

(2013) Antony N. Dodd et al.   NEW PHYTOLOGIST

Complexity of the Alternative Splicing Landscape in Plants

(2013) A. S. N. Reddy et al.   PLANT CELL

Direct regulation of abiotic responses by the Arabidopsis circadian clock component PRR7

(2013) Tiffany Liu et al.   PLANT JOURNAL

Circadian Rhythms of Sense and Antisense Transcription in Sugarcane, a Highly Polyploid Crop

(2013) Carlos Takeshi Hotta et al.   PLoS One

Wheels within wheels: the plant circadian system

(2013) Polly Yingshan Hsu et al.   TRENDS IN PLANT SCIENCE

Forecasting flowering phenology under climate warming by modelling the regulatory dynamics of flowering-time genes

(2013) Akiko Satake et al.   Nature Communications

Accurate timekeeping is controlled by a cycling activator in Arabidopsis

(2013) Polly Yingshan Hsu et al.   eLife

Deciphering and Prediction of Transcriptome Dynamics under Fluctuating Field Conditions

(2012) Atsushi J. Nagano et al.   CELL

Complexity in the Wiring and Regulation of Plant Circadian Networks

(2012) Dawn H. Nagel et al.   CURRENT BIOLOGY

Transcriptome survey reveals increased complexity of the alternative splicing landscape inArabidopsis

(2012) Yamile Marquez et al.   GENOME RESEARCH

Quantitative Variation in Water-Use Efficiency across Water Regimes and Its Relationship with Circadian, Vegetative, Reproductive, and Leaf Gas-Exchange Traits

(2012) Christine E. Edwards et al.   Molecular Plant

Glasshouse vs field experiments: do they yield ecologically similar results for assessing N impacts on peat mosses?

(2012) J. Limpens et al.   NEW PHYTOLOGIST

Mutation ofArabidopsis SPLICEOSOMAL TIMEKEEPER LOCUS1Causes Circadian Clock Defects

(2012) Matthew A. Jones et al.   PLANT CELL

Alternative Splicing Mediates Responses of the Arabidopsis Circadian Clock to Temperature Changes

(2012) A. B. James et al.   PLANT CELL

A Self-Regulatory Circuit of CIRCADIAN CLOCK-ASSOCIATED1 Underlies the Circadian Clock Regulation of Temperature Responses inArabidopsis

(2012) Pil Joon Seo et al.   PLANT CELL

EARLY FLOWERING4 Recruitment of EARLY FLOWERING3 in the Nucleus Sustains the Arabidopsis Circadian Clock

(2012) E. Herrero et al.   PLANT CELL

Arabidopsis circadian clock protein, TOC1, is a DNA-binding transcription factor

(2012) J. M. Gendron et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Transcriptional repressor PRR5 directly regulates clock-output pathways

(2012) N. Nakamichi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cozzarelli Prize Winner: Arabidopsis synchronizes jasmonate-mediated defense with insect circadian behavior

(2012) D. Goodspeed et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

CIRCADIAN CLOCK-ASSOCIATED 1 regulates ROS homeostasis and oxidative stress responses

(2012) A. G. Lai et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Photoperiodic regulation of the C-repeat binding factor (CBF) cold acclimation pathway and freezing tolerance in Arabidopsis thaliana

(2012) C.-M. Lee et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mapping the Core of the Arabidopsis Circadian Clock Defines the Network Structure of the Oscillator

(2012) W. Huang et al.   SCIENCE

Alternative splicing in plants – coming of age

(2012) Naeem H. Syed et al.   TRENDS IN PLANT SCIENCE

LUX ARRHYTHMO Encodes a Nighttime Repressor of Circadian Gene Expression in the Arabidopsis Core Clock

(2011) Anne Helfer et al.   CURRENT BIOLOGY

Temporal Repression of Core Circadian Genes Is Mediated through EARLY FLOWERING 3 in Arabidopsis

(2011) Laura E. Dixon et al.   CURRENT BIOLOGY

Interaction of Arabidopsis DET1 with CCA1 and LHY in Mediating Transcriptional Repression in the Plant Circadian Clock

(2011) On Sun Lau et al.   MOLECULAR CELL

The ELF4–ELF3–LUX complex links the circadian clock to diurnal control of hypocotyl growth

(2011) Dmitri A. Nusinow et al.   NATURE

BROTHER OF LUX ARRHYTHMO Is a Component of the Arabidopsis Circadian Clock

(2011) S. Dai et al.   PLANT CELL

Os-GIGANTEAConfers Robust Diurnal Rhythms on the Global Transcriptome of Rice in the Field

(2011) Takeshi Izawa et al.   PLANT CELL

Light inputs shape the Arabidopsis circadian system

(2011) Bénédicte Wenden et al.   PLANT JOURNAL

Functional implication of the MYB transcription factor RVE8/LCL5 in the circadian control of histone acetylation

(2011) Benoit Farinas et al.   PLANT JOURNAL

CCA1 and ELF3 Interact in the Control of Hypocotyl Length and Flowering Time in Arabidopsis

(2011) S. X. Lu et al.   PLANT PHYSIOLOGY

Global Profiling of Rice and Poplar Transcriptomes Highlights Key Conserved Circadian-Controlled Pathways and cis-Regulatory Modules

(2011) Sergei A. Filichkin et al.   PLoS One

CIRCADIAN CLOCK-ASSOCIATED 1 and LATE ELONGATED HYPOCOTYL regulate expression of the C-REPEAT BINDING FACTOR (CBF) pathway in Arabidopsis

(2011) M. A. Dong et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

REVEILLE8 and PSEUDO-REPONSE REGULATOR5 Form a Negative Feedback Loop within the Arabidopsis Circadian Clock

(2011) Reetika Rawat et al.   PLoS Genetics

Similarities in the circadian clock and photoperiodism in plants

(2010) Young Hun Song et al.   CURRENT OPINION IN PLANT BIOLOGY

A Circadian Surface of Entrainment: Varying T, τ, and Photoperiod in Neurospora crassa

(2010) Jan Rémi et al.   JOURNAL OF BIOLOGICAL RHYTHMS

A methyl transferase links the circadian clock to the regulation of alternative splicing

(2010) Sabrina E. Sanchez et al.   NATURE

The Role of the Arabidopsis Morning Loop Components CCA1, LHY, PRR7, and PRR9 in Temperature Compensation

(2010) P. A. Salome et al.   PLANT CELL

PSEUDO-RESPONSE REGULATORS 9, 7, and 5 Are Transcriptional Repressors in the Arabidopsis Circadian Clock

(2010) N. Nakamichi et al.   PLANT CELL

Ambient temperature response establishes ELF3 as a required component of the core Arabidopsis circadian clock

(2010) B. Thines et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Robust control of the seasonal expression of the Arabidopsis FLC gene in a fluctuating environment

(2010) S. Aikawa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Circadian control of carbohydrate availability for growth in Arabidopsis plants at night

(2010) A. Graf et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Effective use of water (EUW) and not water-use efficiency (WUE) is the target of crop yield improvement under drought stress

(2009) A. Blum   FIELD CROPS RESEARCH

Genome-wide mapping of alternative splicing in Arabidopsis thaliana

(2009) S. A. Filichkin et al.   GENOME RESEARCH

Transcript Profiling of an Arabidopsis PSEUDO RESPONSE REGULATOR Arrhythmic Triple Mutant Reveals a Role for the Circadian Clock in Cold Stress Response

(2009) Norihito Nakamichi et al.   PLANT AND CELL PHYSIOLOGY

Lights, Rhythms, Infection: The Role of Light and the Circadian Clock in Determining the Outcome of Plant-Pathogen Interactions

(2009) L. C. Roden et al.   PLANT CELL

CIRCADIAN CLOCK ASSOCIATED1 and LATE ELONGATED HYPOCOTYL Function Synergistically in the Circadian Clock of Arabidopsis

(2009) S. X. Lu et al.   PLANT PHYSIOLOGY

Posttranslational Regulation of CIRCADIAN CLOCK ASSOCIATED1 in the Circadian Oscillator of Arabidopsis

(2009) E. Yakir et al.   PLANT PHYSIOLOGY

The Phytochrome-Interacting Factor PIF7 Negatively Regulates DREB1 Expression under Circadian Control in Arabidopsis

(2009) S. Kidokoro et al.   PLANT PHYSIOLOGY

REVEILLE1, a Myb-like transcription factor, integrates the circadian clock and auxin pathways

(2009) R. Rawat et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Altered circadian rhythms regulate growth vigour in hybrids and allopolyploids

(2008) Zhongfu Ni et al.   NATURE

Disruption of the Arabidopsis Circadian Clock Is Responsible for Extensive Variation in the Cold-Responsive Transcriptome

(2008) Z. Bieniawska et al.   PLANT PHYSIOLOGY