RootNav 2.0: Deep learning for automatic navigation of complex plant root architectures

Uncovering the hidden half of plants using new advances in root phenotyping

(2018) Jonathan A Atkinson et al.   CURRENT OPINION IN BIOTECHNOLOGY

Deep Plant Phenomics: A Deep Learning Platform for Complex Plant Phenotyping Tasks

(2017) Jordan R. Ubbens et al.   Frontiers in Plant Science

Deep machine learning provides state-of-the-art performance in image-based plant phenotyping

(2017) Michael P. Pound et al.   GigaScience

Machine Learning for High-Throughput Stress Phenotyping in Plants

(2016) Arti Singh et al.   TRENDS IN PLANT SCIENCE

Using Deep Learning for Image-Based Plant Disease Detection

(2016) Sharada P. Mohanty et al.   Frontiers in Plant Science

Image Analysis: The New Bottleneck in Plant Phenotyping [Applications Corner]

(2015) Massimo Minervini et al.   IEEE SIGNAL PROCESSING MAGAZINE

Phenotyping pipeline reveals major seedling root growth QTL in hexaploid wheat

(2015) Jonathan A. Atkinson et al.   JOURNAL OF EXPERIMENTAL BOTANY

Deep learning

(2015) Yann LeCun et al.   NATURE

Digital imaging of root traits (DIRT): a high-throughput computing and collaboration platform for field-based root phenomics

(2015) Abhiram Das et al.   Plant Methods

Root System Markup Language: Toward a Unified Root Architecture Description Language

(2015) Guillaume Lobet et al.   PLANT PHYSIOLOGY

Steep, cheap and deep: an ideotype to optimize water and N acquisition by maize root systems

(2013) Jonathan P. Lynch   ANNALS OF BOTANY

IJ_Rhizo: an open-source software to measure scanned images of root samples

(2013) Alain Pierret et al.   PLANT AND SOIL

Recovering complete plant root system architectures from soil via X-ray μ-Computed Tomography

(2013) Stefan Mairhofer et al.   Plant Methods

RootNav: Navigating Images of Complex Root Architectures

(2013) M. P. Pound et al.   PLANT PHYSIOLOGY

RootScape: A Landmark-Based System for Rapid Screening of Root Architecture in Arabidopsis

(2013) D. Ristova et al.   PLANT PHYSIOLOGY

GiA Roots: software for the high throughput analysis of plant root system architecture

(2012) Taras Galkovskyi et al.   BMC PLANT BIOLOGY

Recovering the dynamics of root growth and development using novel image acquisition and analysis methods

(2012) D. M. Wells et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

High-throughput two-dimensional root system phenotyping platform facilitates genetic analysis of root growth and development

(2012) RANDY T. CLARK et al.   PLANT CELL AND ENVIRONMENT

A Novel Image-Analysis Toolbox Enabling Quantitative Analysis of Root System Architecture

(2011) Guillaume Lobet et al.   PLANT PHYSIOLOGY

Statistical properties of QTL linkage mapping in biparental genetic populations

(2010) H Li et al.   HEREDITY

DART: a software to analyse root system architecture and development from captured images

(2009) Jacques Le Bot et al.   PLANT AND SOIL

OpenAlea: a visual programming and component-based software platform for plant modelling

(2008) Christophe Pradal et al.   FUNCTIONAL PLANT BIOLOGY

EZ-Rhizo: integrated software for the fast and accurate measurement of root system architecture

(2008) Patrick Armengaud et al.   PLANT JOURNAL