Adaptive Evolution of Sphingobium hydrophobicum C1T in Electronic Waste Contaminated River Sediment

Microbial Bioleaching of Ag, Au and Cu from Printed Circuit Boards of Mobile Phones

(2019) María E. Díaz-Martínez et al.   CURRENT MICROBIOLOGY

Role and mechanism of cell-surface hydrophobicity in the adaptation of Sphingobium hydrophobicum to electronic-waste contaminated sediment

(2018) Xingjuan Chen et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Microbial community structure and function in sediments from e-waste contaminated rivers at Guiyu area of China

(2018) Jun Liu et al.   ENVIRONMENTAL POLLUTION

Comparative Genomics of Degradative Novosphingobium Strains With Special Reference to Microcystin-Degrading Novosphingobium sp. THN1

(2018) Juanping Wang et al.   Frontiers in Microbiology

Fast Genome-Wide Functional Annotation through Orthology Assignment by eggNOG-Mapper

(2017) Jaime Huerta-Cepas et al.   MOLECULAR BIOLOGY AND EVOLUTION

IslandViewer 4: expanded prediction of genomic islands for larger-scale datasets

(2017) Claire Bertelli et al.   NUCLEIC ACIDS RESEARCH

The role of Proteus mirabilis cell wall features in biofilm formation

(2016) Grzegorz Czerwonka et al.   ARCHIVES OF MICROBIOLOGY

PRED-TMBB2: improved topology prediction and detection of beta-barrel outer membrane proteins

(2016) Konstantinos D. Tsirigos et al.   BIOINFORMATICS

Genomic analysis of the nitrate-respiring Sphingopyxis granuli (formerly Sphingomonas macrogoltabida) strain TFA

(2016) Inmaculada García-Romero et al.   BMC GENOMICS

Comparison of the complete genome sequences of four γ-hexachlorocyclohexane-degrading bacterial strains: insights into the evolution of bacteria able to degrade a recalcitrant man-made pesticide

(2016) Michiro Tabata et al.   DNA RESEARCH

Sphingobium hydrophobicum sp. nov., a hydrophobic bacterium isolated from electronic-waste-contaminated sediment

(2016)   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Aerobic degradation of BDE-209 by Enterococcus casseliflavus : Isolation, identification and cell changes during degradation process

(2016) Shaoyu Tang et al.   JOURNAL OF HAZARDOUS MATERIALS

BlastKOALA and GhostKOALA: KEGG Tools for Functional Characterization of Genome and Metagenome Sequences

(2016) Minoru Kanehisa et al.   JOURNAL OF MOLECULAR BIOLOGY

PHASTER: a better, faster version of the PHAST phage search tool

(2016) David Arndt et al.   NUCLEIC ACIDS RESEARCH

Lateral Gene Transfer in a Heavy Metal-Contaminated-Groundwater Microbial Community

(2016) Christopher L. Hemme et al.   mBio

New mechanisms of bacterial arsenic resistance

(2016) Hung-Chi Yang et al.   Biomedical Journal

JSpeciesWS: a web server for prokaryotic species circumscription based on pairwise genome comparison

(2015) Michael Richter et al.   BIOINFORMATICS

Characterization of the enhancement of zero valent iron on microbial azo reduction

(2015) Yun Fang et al.   BMC MICROBIOLOGY

Ecological Effects of Combined Pollution Associated with E-Waste Recycling on the Composition and Diversity of Soil Microbial Communities

(2015) Jun Liu et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Pseudomonas aeruginosa PAO1 exopolysaccharides are important for mixed species biofilm community development and stress tolerance

(2015) Saravanan Periasamy et al.   Frontiers in Microbiology

Sphingobium fuliginis HC3: A Novel and Robust Isolated Biphenyl- and Polychlorinated Biphenyls-Degrading Bacterium without Dead-End Intermediates Accumulation

(2015) Jinxing Hu et al.   PLoS One

Comparative genomic analysis of nine Sphingobium strains: insights into their evolution and hexachlorocyclohexane (HCH) degradation pathways

(2014) Helianthous Verma et al.   BMC GENOMICS

Comparative genomic analysis of six bacteria belonging to the genus Novosphingobium: insights into marine adaptation, cell-cell signaling and bioremediation

(2013) Han Gan et al.   BMC GENOMICS

P2RP: a web-based framework for the identification and analysis of regulatory proteins in prokaryotic genomes

(2013) Mohamed Barakat et al.   BMC GENOMICS

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data

(2013) Chen-Shan Chin et al.   NATURE METHODS

CMG-Biotools, a Free Workbench for Basic Comparative Microbial Genomics

(2013) Tammi Vesth et al.   PLoS One

ParaAT: A parallel tool for constructing multiple protein-coding DNA alignments

(2012) Zhang Zhang et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Phthalate esters contamination in soil and plants on agricultural land near an electronic waste recycling site

(2012) Ting Ting Ma et al.   ENVIRONMENTAL GEOCHEMISTRY AND HEALTH

E-Waste Recycling: Where Does It Go from Here?

(2012) Kai Zhang et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity

(2012) Y. Wang et al.   NUCLEIC ACIDS RESEARCH

Carotenoids Play a Positive Role in the Degradation of Heterocycles by Sphingobium yanoikuyae

(2012) Xiaorui Liu et al.   PLoS One

BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons

(2011) Nabil-Fareed Alikhan et al.   BMC GENOMICS

Evolution Under Environmental Stress at Macro- and Microscales

(2011) Eviatar Nevo   Genome Biology and Evolution

Microbial degradation of aromatic compounds — from one strategy to four

(2011) Georg Fuchs et al.   NATURE REVIEWS MICROBIOLOGY

ISsaga is an ensemble of web-based methods for high throughput identification and semi-automatic annotation of insertion sequences in prokaryotic genomes

(2011) Alessandro M Varani et al.   GENOME BIOLOGY

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

KaKs_Calculator 2.0: A Toolkit Incorporating Gamma-Series Methods and Sliding Window Strategies

(2010) Dapeng Wang et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

Gene Amplification and Adaptive Evolution in Bacteria

(2009) Dan I. Andersson et al.   Annual Review of Genetics

Infernal 1.0: inference of RNA alignments

(2009) E. P. Nawrocki et al.   BIOINFORMATICS

Study of the Degradation Activity and the Strategies to Promote the Bioavailability of Phenanthrene by Sphingomonas paucimobilis Strain 20006FA

(2009) Bibiana M. Coppotelli et al.   MICROBIAL ECOLOGY

Molecular characteristics of xenobiotic-degrading sphingomonads

(2008) Andreas Stolz   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY