High-resolution mapping of tuberculosis transmission: Whole genome sequencing and phylogenetic modelling of a cohort from Valencia Region, Spain
出版年份 2019 全文链接
标题
High-resolution mapping of tuberculosis transmission: Whole genome sequencing and phylogenetic modelling of a cohort from Valencia Region, Spain
作者
关键词
-
出版物
PLOS MEDICINE
Volume 16, Issue 10, Pages e1002961
出版商
Public Library of Science (PLoS)
发表日期
2019-11-01
DOI
10.1371/journal.pmed.1002961
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Spotting the old foe—revisiting the case definition for TB
- (2019) Rein M G J Houben et al. Lancet Respiratory Medicine
- Cryptic resistance mutations associated to misdiagnoses of Multidrug-resistant tuberculosis
- (2019) Irving Cancino-Muñoz et al. JOURNAL OF INFECTIOUS DISEASES
- Whole genome sequencing of Mycobacterium tuberculosis: current standards and open issues
- (2019) Conor J. Meehan et al. NATURE REVIEWS MICROBIOLOGY
- Genomic determinants of speciation and spread of the Mycobacterium tuberculosis complex
- (2019) Á. Chiner-Oms et al. Science Advances
- The molecular clock of Mycobacterium tuberculosis
- (2019) Fabrizio Menardo et al. PLoS Pathogens
- Incipient and Subclinical Tuberculosis: a Clinical Review of Early Stages and Progression of Infection
- (2018) Paul K. Drain et al. CLINICAL MICROBIOLOGY REVIEWS
- Internal migration and transmission dynamics of tuberculosis in Shanghai, China: an epidemiological, spatial, genomic analysis
- (2018) Chongguang Yang et al. LANCET INFECTIOUS DISEASES
- Household-Contact Investigation for Detection of Tuberculosis in Vietnam
- (2018) Greg J. Fox et al. NEW ENGLAND JOURNAL OF MEDICINE
- Epidemiological links between tuberculosis cases identified twice as efficiently by whole genome sequencing than conventional molecular typing: A population-based study
- (2018) Rana Jajou et al. PLoS One
- When are pathogen genome sequences informative of transmission events?
- (2018) Finlay Campbell et al. PLoS Pathogens
- Tuberculosis transmission during the subclinical period: could unrelated cough play a part?
- (2018) Hanif Esmail et al. Lancet Respiratory Medicine
- A Quantitative Evaluation of MIRU-VNTR Typing Against Whole-Genome Sequencing for Identifying Mycobacterium tuberculosis Transmission: A Prospective Observational Cohort Study
- (2018) David H. Wyllie et al. EBioMedicine
- TB Transmission: Closing the Gaps
- (2018) Iñaki Comas et al. EBioMedicine
- The End of the Binary Era: Revisiting the Spectrum of Tuberculosis
- (2018) Philana Ling Lin et al. JOURNAL OF IMMUNOLOGY
- Compensatory evolution drives multidrug-resistant tuberculosis in Central Asia
- (2018) Matthias Merker et al. eLife
- Beyond the SNP Threshold: Identifying Outbreak Clusters Using Inferred Transmissions
- (2018) James Stimson et al. MOLECULAR BIOLOGY AND EVOLUTION
- A standardised method for interpreting the association between mutations and phenotypic drug resistance in Mycobacterium tuberculosis
- (2017) Paolo Miotto et al. EUROPEAN RESPIRATORY JOURNAL
- Genomic Epidemiology of a Major Mycobacterium tuberculosis Outbreak: Retrospective Cohort Study in a Low-Incidence Setting Using Sparse Time-Series Sampling
- (2017) Dorte Bek Folkvardsen et al. JOURNAL OF INFECTIOUS DISEASES
- Simultaneous inference of phylogenetic and transmission trees in infectious disease outbreaks
- (2017) Don Klinkenberg et al. PLoS Computational Biology
- Interpreting whole genome sequencing for investigating tuberculosis transmission: a systematic review
- (2016) Hollie-Ann Hatherell et al. BMC Medicine
- SCOTTI: Efficient Reconstruction of Transmission within Outbreaks with the Structured Coalescent
- (2016) Nicola De Maio et al. PLoS Computational Biology
- Towards tuberculosis elimination: an action framework for low-incidence countries
- (2015) Knut Lönnroth et al. EUROPEAN RESPIRATORY JOURNAL
- PhyResSE: a Web Tool Delineating Mycobacterium tuberculosis Antibiotic Resistance and Lineage from Whole-Genome Sequencing Data
- (2015) Silke Feuerriegel et al. JOURNAL OF CLINICAL MICROBIOLOGY
- popart: full-feature software for haplotype network construction
- (2015) Jessica W. Leigh et al. Methods in Ecology and Evolution
- Epidemic Reconstruction in a Phylogenetics Framework: Transmission Trees as Partitions of the Node Set
- (2015) Matthew Hall et al. PLoS Computational Biology
- Large-scale whole genome sequencing of M. tuberculosis provides insights into transmission in a high prevalence area
- (2015) JA Guerra-Assunção et al. eLife
- Whole Genome Sequencing Shows a Low Proportion of Tuberculosis Disease Is Attributable to Known Close Contacts in Rural Malawi
- (2015) Judith R. Glynn et al. PLoS One
- RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
- (2014) Alexandros Stamatakis BIOINFORMATICS
- Tracking a Tuberculosis Outbreak Over 21 Years: Strain-Specific Single-Nucleotide Polymorphism Typing Combined With Targeted Whole-Genome Sequencing
- (2014) David Stucki et al. JOURNAL OF INFECTIOUS DISEASES
- Kraken: ultrafast metagenomic sequence classification using exact alignments
- (2014) Derrick E Wood et al. GENOME BIOLOGY
- Assessment of Mycobacterium tuberculosis transmission in Oxfordshire, UK, 2007–12, with whole pathogen genome sequences: an observational study
- (2014) Timothy M Walker et al. Lancet Respiratory Medicine
- Whole-genome sequencing of Mycobacterium tuberculosis as an epidemiological marker
- (2014) Dick van Soolingen Lancet Respiratory Medicine
- Out-of-Africa migration and Neolithic coexpansion of Mycobacterium tuberculosis with modern humans
- (2013) Iñaki Comas et al. NATURE GENETICS
- Whole Genome Sequencing versus Traditional Genotyping for Investigation of a Mycobacterium tuberculosis Outbreak: A Longitudinal Molecular Epidemiological Study
- (2013) Andreas Roetzer et al. PLOS MEDICINE
- Is Passive Diagnosis Enough?
- (2012) David W. Dowdy et al. AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE
- Whole-Genome Sequencing and Social-Network Analysis of a Tuberculosis Outbreak
- (2011) Jennifer L. Gardy et al. NEW ENGLAND JOURNAL OF MEDICINE
- The spectrum of latent tuberculosis: rethinking the biology and intervention strategies
- (2009) Clifton E. Barry et al. NATURE REVIEWS MICROBIOLOGY
- Genotyping of Genetically Monomorphic Bacteria: DNA Sequencing in Mycobacterium tuberculosis Highlights the Limitations of Current Methodologies
- (2009) Iñaki Comas et al. PLoS One
- Tuberculosis Transmission by Patients with Smear‐Negative Pulmonary Tuberculosis in a Large Cohort in The Netherlands
- (2008) Alma Tostmann et al. CLINICAL INFECTIOUS DISEASES
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started