The β-oxidation pathway is downregulated during diapause termination in Calanus copepods

Molecular physiology of copepods - from biomarkers to transcriptomes and back again

(2019) Ann M. Tarrant et al.   Comparative Biochemistry and Physiology D-Genomics & Proteomics

A Crude Awakening: Effects of Crude Oil on Lipid Metabolism in Calanoid Copepods Terminating Diapause

(2019) Elise Skottene et al.   BIOLOGICAL BULLETIN

Lipid load triggers migration to diapause in Arctic Calanus copepods—insights from underwater imaging

(2018) Moritz S Schmid et al.   JOURNAL OF PLANKTON RESEARCH

Can morphology reliably distinguish between the copepods Calanus finmarchicus and C. glacialis , or is DNA the only way?

(2018) Marvin Choquet et al.   LIMNOLOGY AND OCEANOGRAPHY-METHODS

Physiological characterization of the emergence from diapause: A transcriptomics approach

(2018) Vittoria Roncalli et al.   Scientific Reports

A Tissue-Mapped Axolotl De Novo Transcriptome Enables Identification of Limb Regeneration Factors

(2017) Donald M. Bryant et al.   Cell Reports

Postglacial expansion of the Arctic keystone copepod Calanus glacialis

(2017) Agata Weydmann et al.   Marine Biodiversity

Mitochondrial genomes of the key zooplankton copepods Arctic Calanus glacialis and North Atlantic Calanus finmarchicus with the longest crustacean non-coding regions

(2017) Agata Weydmann et al.   Scientific Reports

Transcriptional Profiling of Metabolic Transitions during Development and Diapause Preparation in the CopepodCalanus finmarchicus

(2016) Ann M. Tarrant et al.   INTEGRATIVE AND COMPARATIVE BIOLOGY

The power and promise of RNA-seq in ecology and evolution

(2016) Erica V. Todd et al.   MOLECULAR ECOLOGY

KEGG as a reference resource for gene and protein annotation

(2015) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

‘Degraded’ RNA profiles in Arthropoda and beyond

(2015) Sean D. McCarthy et al.   PeerJ

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Phylogenomic reconstruction of archaeal fatty acid metabolism

(2014) Daria V. Dibrova et al.   ENVIRONMENTAL MICROBIOLOGY

Transcriptional profiling of reproductive development, lipid storage and molting throughout the last juvenile stage of the marine copepod Calanus finmarchicus

(2014) Ann M Tarrant et al.   Frontiers in Zoology

De Novo Assembly of a Transcriptome for Calanus finmarchicus (Crustacea, Copepoda) – The Dominant Zooplankter of the North Atlantic Ocean

(2014) Petra H. Lenz et al.   PLoS One

A metabolic approach to dormancy in pelagic copepods helps explaining inter- and intra-specific variability in life-history strategies

(2013) Frédéric Maps et al.   JOURNAL OF PLANKTON RESEARCH

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

Torso-like functions independently of Torso to regulateDrosophilagrowth and developmental timing

(2013) Travis K. Johnson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

TAp63 Is a Master Transcriptional Regulator of Lipid and Glucose Metabolism

(2012) Xiaohua Su et al.   Cell Metabolism

Dynamics of the Lipid Content and Biomass of Calanus finmarchicus (copepodite V) in a Norwegian Fjord

(2012) Maria Bergvik et al.   LIPIDS

PPARs are a unique set of fatty acid regulated transcription factors controlling both lipid metabolism and inflammation

(2011) Tamas Varga et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR BASIS OF DISEASE

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Functional genomics resources for the North Atlantic copepod, Calanus finmarchicus: EST database and physiological microarray

(2011) Petra H. Lenz et al.   Comparative Biochemistry and Physiology D-Genomics & Proteomics

Heat shock protein expression during stress and diapause in the marine copepod Calanus finmarchicus

(2011) Amalia M. Aruda et al.   JOURNAL OF INSECT PHYSIOLOGY

Further understanding of fat biology: Lessons from a fat fly

(2010) Joung-Woo Hong et al.   EXPERIMENTAL AND MOLECULAR MEDICINE

Control of dormancy by lipid metabolism in Calanus finmarchicus: a population model test

(2010) F Maps et al.   MARINE ECOLOGY PROGRESS SERIES

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Biopython: freely available Python tools for computational molecular biology and bioinformatics

(2009) P. J. A. Cock et al.   BIOINFORMATICS

Drosophila HNF4 Regulates Lipid Mobilization and β-Oxidation

(2009) Laura Palanker et al.   Cell Metabolism

Seasonal and depth-dependent variations in the size and lipid contents of stage 5 copepodites of Calanus finmarchicus in the waters of the Newfoundland Shelf and the Labrador Sea

(2009) Pierre Pepin et al.   DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS

Arthropod nuclear receptors and their role in molting

(2009) Yoshiaki Nakagawa et al.   FEBS Journal

Lipids and life strategy of ArcticCalanus

(2009) Stig Falk-Petersen et al.   Marine Biology Research

Shelf recruitment of Calanus finmarchicus off the west coast of Norway: role of physical processes and timing of diapause termination

(2009) A Samuelsen et al.   MARINE ECOLOGY PROGRESS SERIES

The nuclear hormone receptor BgE75 links molting and developmental progression in the direct-developing insect Blattella germanica

(2008) Daniel Mané-Padrós et al.   DEVELOPMENTAL BIOLOGY

Short-term variation of nutritive and metabolic parameters in Temora longicornis females (Crustacea, Copepoda) as a response to diet shift and starvation

(2008) Tobias Kreibich et al.   HELGOLAND MARINE RESEARCH

Differential gene expression in diapausing and active Calanus finmarchicus (Copepoda)

(2008) AM Tarrant et al.   MARINE ECOLOGY PROGRESS SERIES

Characteristics of Calanus finmarchicus dormancy patterns in the Northwest Atlantic

(2007) C. L. Johnson et al.   ICES JOURNAL OF MARINE SCIENCE