Proteomic enzyme analysis of the marine fungus Paradendryphiella salina reveals alginate lyase as a minimal adaptation strategy for brown algae degradation

Peptide-based functional annotation of carbohydrate-active enzymes by conserved unique peptide patterns (CUPP)

(2019) Kristian Barrett et al.   Biotechnology for Biofuels

Cloning and characterization of a new pH-stable alginate lyase with high salt tolerance from marine Vibrio sp. NJ-04

(2018) Benwei Zhu et al.   INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES

Biotechnology Potential of Marine Fungi Degrading Plant and Algae Polymeric Substrates

(2018) Larissa Balabanova et al.   Frontiers in Microbiology

Polysaccharide-Degrading Activity in Marine and Terrestrial Strains of Mycelial Fungi

(2018) L. A. Balabanova et al.   RUSSIAN JOURNAL OF BIOORGANIC CHEMISTRY

Genome Sequencing and analyses of Two Marine Fungi from the North Sea Unraveled a Plethora of Novel Biosynthetic Gene Clusters

(2018) Abhishek Kumar et al.   Scientific Reports

Biochemical Reconstruction of a Metabolic Pathway from a Marine Bacterium Reveals Its Mechanism of Pectin Depolymerization

(2018) Joanne K. Hobbs et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Novel Enzyme Actions for Sulphated Galactofucan Depolymerisation and a New Engineering Strategy for Molecular Stabilisation of Fucoidan Degrading Enzymes

(2018) Hang Cao et al.   Marine Drugs

BRENDA in 2019: a European ELIXIR core data resource

(2018) Lisa Jeske et al.   NUCLEIC ACIDS RESEARCH

Aquatic adaptation of a laterally acquired pectin degradation pathway in marine gammaproteobacteria

(2017) Jan-Hendrik Hehemann et al.   ENVIRONMENTAL MICROBIOLOGY

Characterization of alginates from Ghanaian brown seaweeds: Sargassum spp. and Padina spp.

(2017) Nanna Rhein-Knudsen et al.   FOOD HYDROCOLLOIDS

Algal polysaccharide utilisation by saprotrophic planktonic marine fungi

(2017) Michael Cunliffe et al.   Fungal Ecology

Oxidative cleavage of polysaccharides by monocopper enzymes depends on H2O2

(2017) Bastien Bissaro et al.   Nature Chemical Biology

dbCAN-seq: a database of carbohydrate-active enzyme (CAZyme) sequence and annotation

(2017) Le Huang et al.   NUCLEIC ACIDS RESEARCH

Proteomic analysis reveals large amounts of decomposition enzymes and major metabolic pathways involved in algicidal process of Trametes versicolor F21a

(2017) Xueyan Gao et al.   Scientific Reports

Insoluble (1 → 3), (1 → 4)-β-D-glucan is a component of cell walls in brown algae (Phaeophyceae) and is masked by alginates in tissues

(2017) Armando A. Salmeán et al.   Scientific Reports

A Lytic Polysaccharide Monooxygenase with Broad Xyloglucan Specificity from the Brown-Rot Fungus Gloeophyllum trabeum and Its Action on Cellulose-Xyloglucan Complexes

(2016) Yuka Kojima et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Growth of marine fungi on polymeric substrates

(2016) Yanming Wang et al.   BMC BIOTECHNOLOGY

β-glucan: Crucial component of the fungal cell wall and elusive MAMP in plants

(2016) Philipp H. Fesel et al.   FUNGAL GENETICS AND BIOLOGY

Discovery of a Novel Alginate Lyase fromNitratiruptorsp. SB155-2 Thriving at Deep-sea Hydrothermal Vents and Identification of the Residues Responsible for Its Heat Stability

(2016) Akira Inoue et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The Perseus computational platform for comprehensive analysis of (prote)omics data

(2016) Stefka Tyanova et al.   NATURE METHODS

The MaxQuant computational platform for mass spectrometry-based shotgun proteomics

(2016) Stefka Tyanova et al.   Nature Protocols

Reactive oxygen species, essential molecules, during plant–pathogen interactions

(2016) Daymi Camejo et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Secretome analysis of the mycoparasitic fungus Trichoderma harzianum ALL 42 cultivated in different media supplemented with Fusarium solani cell wall or glucose

(2016) Marcelo Henrique Soller Ramada et al.   PROTEOMICS

Comparative Analysis of Secretome Profiles of Manganese(II)-Oxidizing Ascomycete Fungi

(2016) Carolyn A. Zeiner et al.   PLoS One

Matching the Diversity of Sulfated Biomolecules: Creation of a Classification Database for Sulfatases Reflecting Their Substrate Specificity

(2016) Tristan Barbeyron et al.   PLoS One

Genome and secretome analyses provide insights into keratin decomposition by novel proteases from the non-pathogenic fungus Onygena corvina

(2015) Yuhong Huang et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Arabinogalactan proteins have deep roots in eukaryotes: identification of genes and epitopes in brown algae and their role inFucus serratusembryo development

(2015) Cécile Hervé et al.   NEW PHYTOLOGIST

GenBank

(2015) Karen Clark et al.   NUCLEIC ACIDS RESEARCH

De Novo Assembly and Genome Analyses of the Marine-Derived Scopulariopsis brevicaulis Strain LF580 Unravels Life-Style Traits and Anticancerous Scopularide Biosynthetic Gene Cluster

(2015) Abhishek Kumar et al.   PLoS One

Mannitol metabolism during pathogenic fungal–host interactions under stressed conditions

(2015) Mukesh Meena et al.   Frontiers in Microbiology

Chemical and enzymatic fractionation of cell walls from Fucales: insights into the structure of the extracellular matrix of brown algae

(2014) Estelle Deniaud-Bouët et al.   ANNALS OF BOTANY

The Vanadium Iodoperoxidase from the Marine Flavobacteriaceae Species Zobellia galactanivorans Reveals Novel Molecular and Evolutionary Features of Halide Specificity in the Vanadium Haloperoxidase Enzyme Family

(2014) Jean-Baptiste Fournier et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

InterProScan 5: genome-scale protein function classification

(2014) P. Jones et al.   BIOINFORMATICS

Biodegradation of Palisada perforata (Rhodophyceae) and Sargassum sp. (Phaeophyceae) biomass by crude enzyme preparations from algicolous fungi

(2014) Mohamed Gomaa et al.   JOURNAL OF APPLIED PHYCOLOGY

Characterization of AlgMsp, an Alginate Lyase from Microbulbifer sp. 6532A

(2014) Steven M. Swift et al.   PLoS One

Several Genes Encoding Enzymes with the Same Activity Are Necessary for Aerobic Fungal Degradation of Cellulose in Nature

(2014) Peter K. Busk et al.   PLoS One

Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement

(2014) Bruce J. Walker et al.   PLoS One

Discovery of LPMO activity on hemicelluloses shows the importance of oxidative processes in plant cell wall degradation

(2014) J. W. Agger et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The carbohydrate-active enzymes database (CAZy) in 2013

(2013) Vincent Lombard et al.   NUCLEIC ACIDS RESEARCH

Alternaria redefined

(2013) J.H.C. Woudenberg et al.   STUDIES IN MYCOLOGY

Role of mannitol metabolism in the pathogenicity of the necrotrophic fungus Alternaria brassicicola

(2013) Benoit Calmes et al.   Frontiers in Plant Science

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Diverse Lifestyles and Strategies of Plant Pathogenesis Encoded in the Genomes of Eighteen Dothideomycetes Fungi

(2012) Robin A. Ohm et al.   PLoS Pathogens

Toward almost closed genomes with GapFiller

(2012) Marten Boetzer et al.   GENOME BIOLOGY

Marine Fungi: Their Ecology and Molecular Diversity

(2011) Thomas A. Richards et al.   Annual Review of Marine Science

Self versus non-self: fungal cell wall degradation in Trichoderma

(2011) S. Gruber et al.   MICROBIOLOGY-SGM

Accelerated Profile HMM Searches

(2011) Sean R. Eddy   PLoS Computational Biology

Scaffolding pre-assembled contigs using SSPACE

(2010) Marten Boetzer et al.   BIOINFORMATICS

Comprehensive comparative analysis of strand-specific RNA sequencing methods

(2010) Joshua Z Levin et al.   NATURE METHODS

The cell wall polysaccharide metabolism of the brown alga Ectocarpus siliculosus. Insights into the evolution of extracellular matrix polysaccharides in Eukaryotes

(2010) Gurvan Michel et al.   NEW PHYTOLOGIST

Central and storage carbon metabolism of the brown alga Ectocarpus siliculosus: insights into the origin and evolution of storage carbohydrates in Eukaryotes

(2010) Gurvan Michel et al.   NEW PHYTOLOGIST

Database indexing for production MegaBLAST searches

(2008) Aleksandr Morgulis et al.   BIOINFORMATICS

Adaptive response to oxidative stress in the filamentous fungus Aspergillus niger B1-D

(2007) Qiang Li et al.   FREE RADICAL BIOLOGY AND MEDICINE