A simple, reproducible and cost-effective procedure to analyse gut phageome: from phage isolation to bioinformatic approach
出版年份 2019 全文链接
标题
A simple, reproducible and cost-effective procedure to analyse gut phageome: from phage isolation to bioinformatic approach
作者
关键词
-
出版物
Scientific Reports
Volume 9, Issue 1, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2019-08-05
DOI
10.1038/s41598-019-47656-w
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Ceftriaxone and Cefotaxime Have Similar Effects on the Intestinal Microbiota in Human Volunteers Treated by Standard-Dose Regimens
- (2019) Charles Burdet et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- ΦCrAss001 represents the most abundant bacteriophage family in the human gut and infects Bacteroides intestinalis
- (2018) Andrey N. Shkoporov et al. Nature Communications
- Integrative and conjugative elements and their hosts: composition, distribution and organization
- (2017) Jean Cury et al. NUCLEIC ACIDS RESEARCH
- Viral communities of the human gut: metagenomic analysis of composition and dynamics
- (2017) Varun Aggarwala et al. Mobile DNA
- Discovery of an expansive bacteriophage family that includes the most abundant viruses from the human gut
- (2017) Natalya Yutin et al. Nature Microbiology
- Genetic and life-history traits associated with the distribution of prophages in bacteria
- (2016) Marie Touchon et al. ISME Journal
- PHASTER: a better, faster version of the PHAST phage search tool
- (2016) David Arndt et al. NUCLEIC ACIDS RESEARCH
- Healthy human gut phageome
- (2016) Pilar Manrique et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Towards quantitative viromics for both double-stranded and single-stranded DNA viruses
- (2016) Simon Roux et al. PeerJ
- UrQt: an efficient software for the Unsupervised Quality trimming of NGS data
- (2015) Laurent Modolo et al. BMC BIOINFORMATICS
- Evaluation of methods to purify virus-like particles for metagenomic sequencing of intestinal viromes
- (2015) Manuel Kleiner et al. BMC GENOMICS
- Disease-Specific Alterations in the Enteric Virome in Inflammatory Bowel Disease
- (2015) Jason M. Norman et al. CELL
- A comprehensive repertoire of prokaryotic species identified in human beings
- (2015) Perrine Hugon et al. LANCET INFECTIOUS DISEASES
- VirSorter: mining viral signal from microbial genomic data
- (2015) Simon Roux et al. PeerJ
- Optimizing protocols for extraction of bacteriophages prior to metagenomic analyses of phage communities in the human gut
- (2015) Josué L. Castro-Mejía et al. Microbiome
- Classification and quantification of bacteriophage taxa in human gut metagenomes
- (2014) Alison S Waller et al. ISME Journal
- An integrated catalog of reference genes in the human gut microbiome
- (2014) Junhua Li et al. NATURE BIOTECHNOLOGY
- Direct Sequencing from the Minimal Number of DNA Molecules Needed to Fill a 454 Picotiterplate
- (2014) Mária Džunková et al. PLoS One
- Characterization of virus-like particles associated with the human faecal and caecal microbiota
- (2014) Lesley Hoyles et al. RESEARCH IN MICROBIOLOGY
- A highly abundant bacteriophage discovered in the unknown sequences of human faecal metagenomes
- (2014) Bas E. Dutilh et al. Nature Communications
- Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible
- (2014) Paul J. McMurdie et al. PLoS Computational Biology
- Caught in the middle with multiple displacement amplification: the myth of pooling for avoiding multiple displacement amplification bias in a metagenome
- (2014) Rachel Marine et al. Microbiome
- Insights into the phylogeny and coding potential of microbial dark matter
- (2013) Christian Rinke et al. NATURE
- Rapid evolution of the human gut virome
- (2013) S. Minot et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Gnotobiotic mouse model of phage-bacterial host dynamics in the human gut
- (2013) A. Reyes et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Bacteriophages as Pathogens and Immune Modulators?
- (2013) A. Lengeling et al. mBio
- PHACTS, a computational approach to classifying the lifestyle of phages
- (2012) Katelyn McNair et al. BIOINFORMATICS
- CD-HIT: accelerated for clustering the next-generation sequencing data
- (2012) Limin Fu et al. BIOINFORMATICS
- SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
- (2012) Anton Bankevich et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- The Adaptation of Temperate Bacteriophages to Their Host Genomes
- (2012) Louis-Marie Bobay et al. MOLECULAR BIOLOGY AND EVOLUTION
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Diversity and Abundance of Single-Stranded DNA Viruses in Human Feces
- (2011) Min-Soo Kim et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Amplification Methods Bias Metagenomic Libraries of Uncultured Single-Stranded and Double-Stranded DNA Viruses
- (2011) Kyoung-Ho Kim et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- The human gut virome: Inter-individual variation and dynamic response to diet
- (2011) S. Minot et al. GENOME RESEARCH
- Accelerated Profile HMM Searches
- (2011) Sean R. Eddy PLoS Computational Biology
- Prodigal: prokaryotic gene recognition and translation initiation site identification
- (2010) Doug Hyatt et al. BMC BIOINFORMATICS
- Viruses in the faecal microbiota of monozygotic twins and their mothers
- (2010) Alejandro Reyes et al. NATURE
- Multiple displacement amplification compromises quantitative analysis of metagenomes
- (2010) Suzan Yilmaz et al. NATURE METHODS
- Improved Detection of F-Specific RNA Coliphages in Fecal Material by Extraction and Polyethylene Glycol Precipitation
- (2009) T. H. Jones et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Laboratory procedures to generate viral metagenomes
- (2009) Rebecca V Thurber et al. Nature Protocols
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