Diversity in lac Operon Regulation among Diverse Escherichia coli Isolates Depends on the Broader Genetic Background but Is Not Explained by Genetic Relatedness

Escherichia colicultures maintain stable subpopulation structure during long-term evolution

(2018) Megan G. Behringer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Gene Architectures that Minimize Cost of Gene Expression

(2017) Idan Frumkin et al.   MOLECULAR CELL

Benefit of transferred mutations is better predicted by the fitness of recipients than by their ecological or genetic relatedness

(2016) Yinhua Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

DNA supercoiling, a critical signal regulating the basal expression of the lac operon in Escherichia coli

(2016) Geraldine Fulcrand et al.   Scientific Reports

Cellular Growth Arrest and Persistence from Enzyme Saturation

(2016) J. Christian J. Ray et al.   PLoS Computational Biology

Stress-response balance drives the evolution of a network module and its host genome

(2015) C. Gonzalez et al.   Molecular Systems Biology

Hierarchy of non-glucose sugars in Escherichia coli

(2014) Guy Aidelberg et al.   BMC Systems Biology

Mutations in Transcriptional Regulators Allow Selective Engineering of Signal Integration Logic

(2014) S. Semsey   mBio

Environmental Dependence of Genetic Constraint

(2013) Marjon G. J. de Vos et al.   PLoS Genetics

Heritable Change Caused by Transient Transcription Errors

(2013) Alasdair J. E. Gordon et al.   PLoS Genetics

Activating Transcription in Bacteria

(2012) David J. Lee et al.   Annual Review of Microbiology

Cost-Benefit Tradeoffs in Engineered lac Operons

(2012) M. Eames et al.   SCIENCE

Robust Detection of Hierarchical Communities from Escherichia coli Gene Expression Data

(2012) Santiago Treviño et al.   PLoS Computational Biology

Adaptive Evolution of the Lactose Utilization Network in Experimentally Evolved Populations of Escherichia coli

(2012) Selwyn Quan et al.   PLoS Genetics

Evidencing the role of lactose permease in IPTG uptake by Escherichia coli in fed-batch high cell density cultures

(2011) Alfred Fernández-Castané et al.   JOURNAL OF BIOTECHNOLOGY

Nonlinear Fitness Landscape of a Molecular Pathway

(2011) Lilia Perfeito et al.   PLoS Genetics

Pan-genome sequence analysis using Panseq: an online tool for the rapid analysis of core and accessory genomic regions

(2010) Chad Laing et al.   BMC BIOINFORMATICS

Interdependence of Cell Growth and Gene Expression: Origins and Consequences

(2010) M. Scott et al.   SCIENCE

Transcription, Translation, and the Evolution of Specialists and Generalists

(2009) S. Zhong et al.   MOLECULAR BIOLOGY AND EVOLUTION

Pathogenic adaptation of intracellular bacteria by rewiring a cis-regulatory input function

(2009) S. E. Osborne et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Cost of Expression of Escherichia coli lac Operon Proteins Is in the Process, Not in the Products

(2008) D. M. Stoebel et al.   GENETICS

Diverse Two-Dimensional Input Functions Control Bacterial Sugar Genes

(2008) Shai Kaplan et al.   MOLECULAR CELL

Stochastic switching as a survival strategy in fluctuating environments

(2008) Murat Acar et al.   NATURE GENETICS

Expression Profiles Reveal Parallel Evolution of Epistatic Interactions Involving the CRP Regulon in Escherichia coli

(2008) Tim F. Cooper et al.   PLoS Genetics

A Stochastic Single-Molecule Event Triggers Phenotype Switching of a Bacterial Cell

(2008) P. J. Choi et al.   SCIENCE