Bacterial community composition and fhs profiles of low- and high-ammonia biogas digesters reveal novel syntrophic acetate-oxidising bacteria

Microbial diversity and dynamicity of biogas reactors due to radical changes of feedstock composition

(2015) Davide De Francisci et al.   BIORESOURCE TECHNOLOGY

Evidence of syntrophic acetate oxidation by Spirochaetes during anaerobic methane production

(2015) Sang-Hoon Lee et al.   BIORESOURCE TECHNOLOGY

Trace element and temperature effects on microbial communities and links to biogas digester performance at high ammonia levels

(2015) Maria Westerholm et al.   Biotechnology for Biofuels

Comparative genome analysis of Pediococcus damnosus LMG 28219, a strain well-adapted to the beer environment

(2015) Isabel Snauwaert et al.   BMC GENOMICS

Got Lactobacillus? Commensals Power Growth

(2015) Do-Young Park et al.   Cell Host & Microbe

Biogas Upgrading via Hydrogenotrophic Methanogenesis in Two-Stage Continuous Stirred Tank Reactors at Mesophilic and Thermophilic Conditions

(2015) Ilaria Bassani et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Microbial dark matter ecogenomics reveals complex synergistic networks in a methanogenic bioreactor

(2015) Masaru K Nobu et al.   ISME Journal

Complete genome sequence of the novel Porphyromonadaceae bacterium strain ING2-E5B isolated from a mesophilic lab-scale biogas reactor

(2015) Sarah Hahnke et al.   JOURNAL OF BIOTECHNOLOGY

Ammonia threshold for inhibition of anaerobic digestion of thin stillage and the importance of organic loading rate

(2015) Jan Moestedt et al.   Microbial Biotechnology

DegePrime, a Program for Degenerate Primer Design for Broad-Taxonomic-Range PCR in Microbial Ecology Studies

(2014) Luisa W. Hugerth et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Microbial Community Dynamics and Stability during an Ammonia-Induced Shift to Syntrophic Acetate Oxidation

(2014) Jeffrey J. Werner et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences

(2014) Jai Ram Rideout et al.   PeerJ

The dominant acetate degradation pathway/methanogenic composition in full-scale anaerobic digesters operating under different ammonia levels

(2013) I. A. Fotidis et al.   International Journal of Environmental Science and Technology

Syntrophic acetate oxidation in industrial CSTR biogas digesters

(2013) Li Sun et al.   JOURNAL OF BIOTECHNOLOGY

Carbon dioxide concentration dictates alternative methanogenic pathways in oil reservoirs

(2013) Daisuke Mayumi et al.   Nature Communications

Bioaugmentation of Syntrophic Acetate-Oxidizing Culture in Biogas Reactors Exposed to Increasing Levels of Ammonia

(2012) Maria Westerholm et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Genome-guided analysis of physiological and morphological traits of the fermentative acetate oxidizer Thermacetogenium phaeum

(2012) Dirk Oehler et al.   BMC GENOMICS

Origin and fate of acetate in an acidic fen

(2012) Anke Hädrich et al.   FEMS MICROBIOLOGY ECOLOGY

Caldicoprobacter guelmensis sp. nov., a thermophilic, anaerobic, xylanolytic bacterium isolated from a hot spring

(2012) A. Bouanane-Darenfed et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

First insights into the syntrophic acetate-oxidizing bacteria - a genetic study

(2012) Bettina Müller et al.   MicrobiologyOpen

Competing Formate- and Carbon Dioxide-Utilizing Prokaryotes in an Anoxic Methane-Emitting Fen Soil

(2011) Sindy Hunger et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Formyltetrahydrofolate Synthetase Gene Diversity in the Guts of Higher Termites with Different Diets and Lifestyles

(2011) Elizabeth A. Ottesen et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons

(2011) B. J. Haas et al.   GENOME RESEARCH

Changes in the Acetogenic Population in a Mesophilic Anaerobic Digester in Response to Increasing Ammonia Concentration

(2011) Maria Westerholm et al.   MICROBES AND ENVIRONMENTS

Detection of active, potentially acetate-oxidizing syntrophs in an anaerobic digester by flux measurement and formyltetrahydrofolate synthetase (FTHFS) expression profiling

(2011) T. Hori et al.   MICROBIOLOGY-SGM

Tepidanaerobacter acetatoxydans sp. nov., an anaerobic, syntrophic acetate-oxidizing bacterium isolated from two ammonium-enriched mesophilic methanogenic processes

(2011) Maria Westerholm et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Syntrophic acetate oxidation in two-phase (acid–methane) anaerobic digesters

(2011) T. Shimada et al.   WATER SCIENCE AND TECHNOLOGY

Quantification of syntrophic acetate-oxidizing microbial communities in biogas processes

(2011) Maria Westerholm et al.   Environmental Microbiology Reports

Diversity of Formyltetrahydrofolate Synthetases in the Guts of the Wood-Feeding Cockroach Cryptocercus punctulatus and the Omnivorous Cockroach Periplaneta americana

(2010) E. A. Ottesen et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Functional Gene Analysis Suggests Different Acetogen Populations in the Bovine Rumen and Tammar Wallaby Forestomach

(2010) E. J. Gagen et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Presence of Novel, Potentially Homoacetogenic Bacteria in the Rumen as Determined by Analysis of Formyltetrahydrofolate Synthetase Sequences from Ruminants

(2010) G. Henderson et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Caldicoprobacter algeriensis sp. nov. a New Thermophilic Anaerobic, Xylanolytic Bacterium Isolated from an Algerian Hot Spring

(2010) Amel Bouanane-Darenfed et al.   CURRENT MICROBIOLOGY

Diversity of the Formyltetrahydrofolate Synthetase (FTHFS) Gene in the Proximal and Mid Ostrich Colon

(2010) Hiroki Matsui et al.   CURRENT MICROBIOLOGY

Predominant Contribution of Syntrophic Acetate Oxidation to Thermophilic Methane Formation at High Acetate Concentrations

(2010) Li-Ping Hao et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Acetogenesis in Deep Subseafloor Sediments of The Juan de Fuca Ridge Flank: A Synthesis of Geochemical, Thermodynamic, and Gene-based Evidence

(2010) Mark A. Lever et al.   GEOMICROBIOLOGY JOURNAL

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Enrichment of acetogenic bacteria in high rate anaerobic reactors under mesophilic and thermophilic conditions

(2010) P. Ryan et al.   WATER RESEARCH

Real-time PCR assays targeting formyltetrahydrofolate synthetase gene to enumerate acetogens in natural and engineered environments

(2009) Kewei Xu et al.   ANAEROBE

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

Diversity of the Formyltetrahydrofolate Synthetase Gene (fhs), a Key Enzyme for Reductive Acetogenesis, in the Bovine Rumen

(2008) Hiroki MATSUI et al.   BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY

Syntrophic Acetate-Oxidizing Microbes in Methanogenic Environments

(2008) Satoshi Hattori   MICROBES AND ENVIRONMENTS

Investigation of the diversity of homoacetogenic bacteria in mesophilic and thermophilic anaerobic sludges using the formyltetrahydrofolate synthetase gene

(2008) P. Ryan et al.   WATER SCIENCE AND TECHNOLOGY

Ammonia, a selective agent for methane production by syntrophic acetate oxidation at mesophilic temperature

(2008) A. Schnürer et al.   WATER SCIENCE AND TECHNOLOGY