Article
Chemistry, Analytical
Anna Pepanian, Paul Sommerfeld, Renata Kasprzyk, Toni Kuehl, F. Ayberk Binbay, Christoph Hauser, Reik Loeser, Robert Wodtke, Marcelina Bednarczyk, Mikolaj Chrominski, Joanna Kowalska, Jacek Jemielity, Diana Imhof, Markus Pietsch
Summary: A new method based on fluorescence anisotropy was developed to determine the affinity of ligands at the GTP-binding site and quantify the fraction of active G alpha i1 protein. An advanced bacterial expression protocol was used to produce active human G alpha i1 protein, and its GTP binding capability was determined with novel fluorescently labeled guanine nucleotides.
ANALYTICAL CHEMISTRY
(2022)
Article
Chemistry, Analytical
Anna Pepanian, Paul Sommerfeld, Renata Kasprzyk, Toni Kuehl, F. Ayberk Binbay, Christoph Hauser, Reik Loeser, Robert Wodtke, Marcelina Bednarczyk, Mikolaj Chrominski, Joanna Kowalska, Jacek Jemielity, Diana Imhof, Markus Pietsch
Summary: This study presents a reliable fluorescence anisotropy-based method to determine ligands' affinity at the GTP-binding site and quantify the fraction of active G alpha i1 protein. It contributes a novel approach for future investigations of G alpha i and other G alpha protein subunits, exploring their signal transduction systems and potential biomedical applications.
ANALYTICAL CHEMISTRY
(2022)
Article
Multidisciplinary Sciences
Daniel C. Carrettiero, Maria C. Almeida, Andrew P. Longhini, Jennifer N. Rauch, Dasol Han, Xuemei Zhang, Saeed Najafi, Jason E. Gestwicki, Kenneth S. Kosik
Summary: The formation of membraneless organelles in response to stress is a proteotoxic stress control mechanism that condenses certain components to mediate protein degradation decisions. These organelles, marked by BAG2, lack RNA and ubiquitin, and promote client degradation independently of ubiquitin through the 20S proteasome. They protect cells from stress and can transport to client proteins, such as Tau, on microtubules. The chaperone HSP-70 and the 20S proteasome, activated by members of the PA28 family, are important components of these ubiquitin-independent degradation organelles.
NATURE COMMUNICATIONS
(2022)
Article
Biochemistry & Molecular Biology
Donghee Ham, Donghoon Ahn, Janbolat Ashim, Yejin Cho, Hee Ryung Kim, Wookyung Yu, Ka Young Chung
Summary: This study investigated structural factors affecting GDP release by introducing point mutations in selected, conserved residues in G alpha i3, and found that dynamic changes in the phosphate-binding regions are an immediate factor for the release of GDP.
JOURNAL OF STRUCTURAL BIOLOGY
(2021)
Review
Biochemistry & Molecular Biology
Natsumi Maruta, Yuri Trusov, Alan M. Jones, Jose R. Botella
Summary: Plant G proteins consist of canonical G alpha subunits and unconventional XLG subunits, interacting with G beta gamma dimers and RGS protein, and participating in development, stress responses, and immunity. Despite the overall similarity between plant and animal G alpha subunits, they convey signals differently.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2021)
Article
Biochemistry & Molecular Biology
Tobias Friedrich, Francesca Ferrante, Leo Pioger, Andrea Nist, Thorsten Stiewe, Jean-Christophe Andrau, Marek Bartkuhn, Benedetto Daniele Giaimo, Tilman Borggrefe
Summary: The study investigates the role of transcription factor RBPJ in the Notch signaling pathway. It is found that RBPJ not only participates in the Notch co-activator complex, but also functions as a repressor, playing a crucial role in regulating Notch target genes.
NUCLEIC ACIDS RESEARCH
(2022)
Review
Plant Sciences
Yijie Wang, Jose Ramon Botella
Summary: As sessile organisms, plants have evolved mechanisms to adapt to environmental fluctuations. Heterotrimeric G proteins play essential roles in the response to stress in plants, regulating multiple signaling pathways. Understanding the functions of G proteins in stress reactions can contribute to the development of resilient crops and global food security.
Article
Plant Sciences
Boominathan Mohanasundaram, Audrey Dodds, Vandna Kukshal, Joseph M. Jez, Sona Pandey
Summary: Heterotrimeric G-proteins show sporadic presence in algae and specific components are frequently lost in land plants. The signaling pathways mediated by these proteins influence growth, development, and physiology in plants. The existence of XLGαβγ trimers is conserved in the entire land plant lineage, but their presence is sporadic in algae. The different components have distinct evolutionary histories.
Article
Biochemistry & Molecular Biology
Maozhen Luo, Zhiwei Han, Guoye Huang, Rongfang Li, Yi Liu, Junjie Lu, Lin Liu, Rui Miao
Summary: In this review, the structural characteristics of guanine nucleotide-binding (G) proteins and their binding modes with GTP or ATP were compared and analyzed, providing new insights into the enormous diversity of biological function of G proteins.
PLANT SIGNALING & BEHAVIOR
(2022)
Review
Plant Sciences
R. Ofoe
Summary: Heterotrimeric G-proteins regulate important signaling pathways for growth and development in both plants and animals. Understanding the complexities of plant G-proteins could potentially impact global food security by improving crop development. Further research on molecular mechanisms underlying G-protein signaling in diverse plant species will be essential for enhancing our understanding and improving crop improvement.
Review
Cell Biology
Xiusheng Chen, Qi Wang, Shihua Li, Xiao-Jiang Li, Weili Yang
Summary: PINK1 is a mitochondrial kinase involved in mitophagy and neuronal protection. Mutations in PINK1 gene can cause early onset Parkinson's disease with mitochondrial dysfunction. Although there is evidence from in vitro studies supporting the role of PINK1 in regulating mitochondrial function, strong in vivo evidence is still lacking. Additionally, PINK1 has functions independent of mitochondria.
FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY
(2022)
Article
Plant Sciences
Natsumi Maruta, Yuri Trusov, Daisuke Urano, David Chakravorty, Sarah M. Assmann, Alan M. Jones, Jose R. Botella
Summary: XLG2, an unconventional G alpha subunit, plays a major role in plant defense through GTP-independent mechanisms. The XLG2(T476N) variant without GTP binding ability retains interactions with key proteins involved in defense responses, highlighting the diverse functions of XLG2 in Arabidopsis.
Article
Chemistry, Analytical
Jiarong Wang, Bo Wu, Youjia Zhang, Liang Ge, Junfeng Wang
Summary: In this study, a 1D F-19 NMR-based method was developed for rapid detection of GEF activity of sGTPases, by tracking the conformational changes of the Arf6 switch region. This strategy could potentially be applied to monitor the conformational change of Arf6 or other sGTPase and detect the activities of sGTPase regulatory proteins in physiology and pathology environments.
ANALYTICAL CHEMISTRY
(2022)
Article
Cardiac & Cardiovascular Systems
Hideaki Inazumi, Koichiro Kuwahara, Yasuaki Nakagawa, Yoshihiro Kuwabara, Takuro Numaga-Tomita, Toshihide Kashihara, Tsutomu Nakada, Nagomi Kurebayashi, Miku Oya, Miki Nonaka, Masami Sugihara, Hideyuki Kinoshita, Kenji Moriuchi, Hiromu Yanagisawa, Toshio Nishikimi, Hirohiko Motoki, Mitsuhiko Yamada, Sachio Morimoto, Kinya Otsu, Richard M. Mortensen, Kazuwa Nakao, Takeshi Kimura
Summary: NRSF is a transcriptional repressor that suppresses the reactivation of fetal cardiac gene program and maintains cardiac integrity. This study reveals that NRSF regulates ventricular function by controlling the expression of G alpha(o) gene, and excessive expression of G alpha(o) leads to cardiac dysfunction. Additionally, G alpha(o) plays a critical role in cardiac Ca2+ homeostasis and systolic function.
CIRCULATION RESEARCH
(2022)
Article
Biochemistry & Molecular Biology
Yasir H. Ibrahim, Spyridon Pantelios, Anders P. Mutvei
Summary: A simple tool has been developed to isolate endogenous mTORC1 protein from various cellular sources. This cost-effective and scalable method can aid in mTORC1-related research.
JOURNAL OF BIOLOGICAL CHEMISTRY
(2023)
Review
Biochemistry & Molecular Biology
Xiangqiang Zhan, Yuming Lu, Jian-Kang Zhu, Jose Ramon Botella
Summary: The CRISPR technology has significantly impacted plant biology and crop improvement, with developments ranging from gene disruption to precise editing techniques like base editing and gene targeting. Advances have also been made in using different CRISPR systems for gene transcription and epigenome control.
JOURNAL OF INTEGRATIVE PLANT BIOLOGY
(2021)
Article
Parasitology
Oyime Poise Aula, Donald Peter McManus, Michael Glenn Mason, Jose Ramon Botella, Catherine Amy Gordon
Summary: Researchers have optimized DNA dipstick technology to quickly purify Schistosoma japonicum DNA, successfully detecting it in various life stages and enabling on-site disease detection.
EXPERIMENTAL PARASITOLOGY
(2021)
Article
Plant Sciences
Karen Massel, Yasmine Lam, Jessica Hintzsche, Nicholas Lester, Jose R. Botella, Ian D. Godwin
Summary: Utilizing endogenous U6 promoters can enhance CRISPR/Cas9 editing efficiency in sorghum and may have potential applications for gene editing in other cereals.
PLANT CELL REPORTS
(2022)
Article
Plant Sciences
Yusen Zhou, Xiaomin Zhang, Jing Chen, Xiaopeng Guo, Hongyan Wang, Weibo Zhen, Junli Zhang, Zhubing Hu, Xuebing Zhang, Jose Ramon Botella, Toshiro Ito, Siyi Guo
Summary: In this study, we identified AHL9 as a positive regulator of leaf senescence in Arabidopsis thaliana. AHL9 accelerates leaf senescence through ethylene synthesis or signaling.
Article
Plant Sciences
Kun Li, Qianyun Jia, Jinggong Guo, Zhijuan Zhu, Mengying Shao, Jin Wang, Weiqiang Li, Jie Dai, Minghui Guo, Rui Li, Jieqiong Song, Fengbo Yang, Jingyi Du, Jose R. Botella, Chun-Peng Song, Yuchen Miao
Summary: Mutations in the GPX7 gene in plants lead to increased photo-bleaching under high light conditions, and GPX7 plays a crucial role in chloroplast function.
ENVIRONMENTAL AND EXPERIMENTAL BOTANY
(2022)
Article
Plant Sciences
Qing-Bin Chen, Wen-Jing Wang, Yue Zhang, Qi-Di Zhan, Kang Liu, Jose Ramon Botella, Ling Bai, Chun-Peng Song
Summary: Seed germination is regulated by multiple factors, including the phytohormone abscisic acid (ABA) and the light signal repressor COP1. Disruption of COP1 enhances the sensitivity of seeds to ABA, leading to increased levels of reactive oxygen species (ROS). COP1 is translocated to the cytoplasm upon ABA induction, resulting in increased nuclear localization of HY5 and ABI5 proteins and the upregulation of ABI5 target genes and ROS levels during ABA-mediated inhibition of seed germination.
PLANT CELL AND ENVIRONMENT
(2022)
Article
Plant Sciences
Chunjie Wei, Hao Liu, Wenwen Wang, Pengyu Luo, Qiuling Chen, Rou Li, Chong Wang, Jose Ramon Botella, Hui Zhang
Summary: Recently developed base editors have been proven to be a powerful tool for plant research and crop improvement. Researchers have fused a non-sequence-specific single-stranded DNA-binding domain (DBD) from the human Rad51 protein with Cas9 nickase and deaminase, resulting in dramatically increased editing efficiency and expanded editing window. This strategy has been successfully applied in rice, demonstrating improved editing range.
FRONTIERS IN PLANT SCIENCE
(2022)
Review
Plant Sciences
Yijie Wang, Jose Ramon Botella
Summary: As sessile organisms, plants have evolved mechanisms to adapt to environmental fluctuations. Heterotrimeric G proteins play essential roles in the response to stress in plants, regulating multiple signaling pathways. Understanding the functions of G proteins in stress reactions can contribute to the development of resilient crops and global food security.
Review
Plant Sciences
Jose R. Botella
Summary: Early detection of pests and pathogens is crucial for reducing agricultural losses. Point-of-care (POC) diagnostics, especially those based on nucleic acid amplification, have shown great potential in providing early warning and allowing prompt preventive measures. POC amplification technologies that do not require thermocycling offer high sensitivity and specificity. However, the success of POC amplification ultimately relies on the availability of POC-friendly nucleic acid extraction methods and amplification readouts.
ANNUAL REVIEW OF PHYTOPATHOLOGY
(2022)
Article
Plant Sciences
Zhengjing Zhang, Wenjie Zeng, Wenxin Zhang, Jing Li, Dali Kong, Lei Zhang, Rui Wang, Fangnan Peng, Zhe Kong, Yongping Ke, Heng Zhang, Chanhong Kim, Huiming Zhang, Jose Ramon Botella, Jian-Kang Zhu, Daisuke Miki
Summary: The study established a CRISPR/Cas9-mediated technique for heritable gene targeting in Arabidopsis, achieving precise GT using the sequential transformation method and obtaining vector-free GT plants. The research sheds light on the molecular mechanisms of CRISPR/Cas9-mediated GT in Arabidopsis and provides a broadly applicable technology for precise genome manipulation.
Article
Plant Sciences
Liangliang Li, Linxiao Li, Shenghui Cui, Dongdong Qian, Shijie Lyu, Wencheng Liu, Jose Ramon Botella, Huilin Li, David J. Burritt, Lam-Son Phan Tran, Weiqiang Li, Yu Zhang
Summary: Seed germination in Arabidopsis is regulated by ABA through the activation of PDC1 gene, which promotes fatty acid beta-oxidation and ROS accumulation, resulting in inhibition of seed germination.
ENVIRONMENTAL AND EXPERIMENTAL BOTANY
(2023)
Article
Biotechnology & Applied Microbiology
Yiping Zou, Michael Glenn Mason, Jose Ramon Botella
Summary: Amplification-based diagnostics is widely used in plant disease diagnostics due to its sensitivity, rapidness, and flexibility. However, there is a high demand for modules that can interpret amplification results rapidly, reliably, and easily in resource-limited settings. Therefore, we have developed a portable, low-cost, and easy-to-perform device named Dr. Diagnose, which allows users to accurately and unbiasedly read amplification reactions in a user-friendly manner.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY
(2023)
Article
Microbiology
J. M. Templeton, J. R. Botella, P. J. Blackall
Summary: This article describes the research on low cost, low technology POM assays in the field of food safety as applied to the poultry industries, and discusses the advantages and disadvantages of these assays.
MICROBIOLOGY AUSTRALIA
(2022)
Review
Biochemistry & Molecular Biology
Natsumi Maruta, Yuri Trusov, Alan M. Jones, Jose R. Botella
Summary: Plant G proteins consist of canonical G alpha subunits and unconventional XLG subunits, interacting with G beta gamma dimers and RGS protein, and participating in development, stress responses, and immunity. Despite the overall similarity between plant and animal G alpha subunits, they convey signals differently.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2021)
Article
Plant Sciences
Natsumi Maruta, Yuri Trusov, Daisuke Urano, David Chakravorty, Sarah M. Assmann, Alan M. Jones, Jose R. Botella
Summary: XLG2, an unconventional G alpha subunit, plays a major role in plant defense through GTP-independent mechanisms. The XLG2(T476N) variant without GTP binding ability retains interactions with key proteins involved in defense responses, highlighting the diverse functions of XLG2 in Arabidopsis.