Critical assessment of methods of protein structure prediction (CASP)—Round XIII

GalaxyRefine2: simultaneous refinement of inaccurate local regions and overall protein structure

(2019) Gyu Rie Lee et al.   NUCLEIC ACIDS RESEARCH

De novo protein design by citizen scientists

(2019) Brian Koepnick et al.   NATURE

Protein-level assembly increases protein sequence recovery from metagenomic samples manyfold

(2019) Martin Steinegger et al.   NATURE METHODS

Evaluation of model refinement in CASP13

(2019) Randy J. Read et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

CASP13 target classification into tertiary structure prediction categories

(2019) Lisa N. Kinch et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Prediction of interresidue contacts with DeepMetaPSICOV in CASP13

(2019) Shaun M. Kandathil et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

NMR‐assisted protein structure prediction with MELDxMD

(2019) James C. Robertson et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Driven to Near‐Experimental Accuracy by Refinement via Molecular Dynamics Simulations

(2019) Lim Heo et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Distance-based protein folding powered by deep learning

(2019) Jinbo Xu   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Assessment of protein assembly prediction in CASP13

(2019) Dmytro Guzenko et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

High‐accuracy refinement using Rosetta in CASP13

(2019) Hahnbeom Park et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Assessment of protein model structure accuracy estimation in CASP13: Challenges in the era of deep learning

(2019) Jonghun Won et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Target highlights in CASP13: Experimental target structures through the eyes of their authors

(2019) Rosalba Lepore et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Protein structure prediction using multiple deep neural networks in the 13th Critical Assessment of Protein Structure Prediction (CASP13)

(2019) Andrew W. Senior et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Assessment of chemical‐crosslink‐assisted protein structure modeling in CASP13

(2019) J. Eduardo Fajardo et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Cryo‐electron microscopy targets in CASP13: Overview and evaluation of results

(2019) Andriy Kryshtafovych et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Recent developments in deep learning applied to protein structure prediction

(2019) Shaun M. Kandathil et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Blind prediction of homo‐ and hetero‐protein complexes: The CASP13‐CAPRI experiment

(2019) Marc F. Lensink et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Small angle X-ray scattering and cross-linking for data assisted protein structure prediction in CASP 12 with prospects for improved accuracy

(2018) Tadeusz L. Ogorzalek et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Deep Audio-Visual Speech Recognition

(2018) Triantafyllos Afouras et al.   IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE

A survey on deep learning in medical image analysis

(2017) Geert Litjens et al.   MEDICAL IMAGE ANALYSIS

Biological and functional relevance of CASP predictions

(2017) Tianyun Liu et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Assessment of model accuracy estimations in CASP12

(2017) Andriy Kryshtafovych et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Analysis of deep learning methods for blind protein contact prediction in CASP12

(2017) Sheng Wang et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Assessment of the model refinement category in CASP12

(2017) Ladislav Hovan et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Critical assessment of methods of protein structure prediction (CASP)-Round XII

(2017) John Moult et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Accurate De Novo Prediction of Protein Contact Map by Ultra-Deep Learning Model

(2017) Sheng Wang et al.   PLoS Computational Biology

The Current Revolution in Cryo-EM

(2016) Edward H. Egelman   BIOPHYSICAL JOURNAL

Modeling complexes of modeled proteins

(2016) Ivan Anishchenko et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Biological function derived from predicted structures in CASP11

(2016) Peter J. Huwe et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Assessment of refinement of template-based models in CASP11

(2016) Vivek Modi et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Accurate contact predictions using covariation techniques and machine learning

(2015) Tomasz Kosciolek et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

New encouraging developments in contact prediction: Assessment of the CASP11 results

(2015) Bohdan Monastyrskyy et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Protein-Protein Docking: From Interaction to Interactome

(2014) Ilya A. Vakser   BIOPHYSICAL JOURNAL

Emerging methods in protein co-evolution

(2013) David de Juan et al.   NATURE REVIEWS GENETICS

CASP10 results compared to those of previous CASP experiments

(2013) Andriy Kryshtafovych et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Evaluation of predictions in the CASP10 model refinement category

(2013) Timothy Nugent et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Assessment of the protein-structure refinement category in CASP8

(2009) Justin L. MacCallum et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS