An ultra high-throughput method for single-cell joint analysis of open chromatin and transcriptome
出版年份 2019 全文链接
标题
An ultra high-throughput method for single-cell joint analysis of open chromatin and transcriptome
作者
关键词
-
出版物
NATURE STRUCTURAL & MOLECULAR BIOLOGY
Volume 26, Issue 11, Pages 1063-1070
出版商
Springer Science and Business Media LLC
发表日期
2019-11-07
DOI
10.1038/s41594-019-0323-x
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Profiling of Pluripotency Factors in Single Cells and Early Embryos
- (2019) Sarah J. Hainer et al. CELL
- MAPS: Model-based analysis of long-range chromatin interactions from PLAC-seq and HiChIP experiments
- (2019) Ivan Juric et al. PLoS Computational Biology
- Droplet-based combinatorial indexing for massive-scale single-cell chromatin accessibility
- (2019) Caleb A. Lareau et al. NATURE BIOTECHNOLOGY
- High-throughput single-cell ChIP-seq identifies heterogeneity of chromatin states in breast cancer
- (2019) Kevin Grosselin et al. NATURE GENETICS
- Simultaneous profiling of 3D genome structure and DNA methylation in single human cells
- (2019) Dong-Sung Lee et al. NATURE METHODS
- Joint profiling of DNA methylation and chromatin architecture in single cells
- (2019) Guoqiang Li et al. NATURE METHODS
- High-throughput sequencing of the transcriptome and chromatin accessibility in the same cell
- (2019) Song Chen et al. NATURE BIOTECHNOLOGY
- Integrating single-cell transcriptomic data across different conditions, technologies, and species
- (2018) Andrew Butler et al. NATURE BIOTECHNOLOGY
- Single-nucleus analysis of accessible chromatin in developing mouse forebrain reveals cell-type-specific transcriptional regulation
- (2018) Sebastian Preissl et al. NATURE NEUROSCIENCE
- Single-cell profiling of the developing mouse brain and spinal cord with split-pool barcoding
- (2018) Alexander B. Rosenberg et al. SCIENCE
- Cicero Predicts cis-Regulatory DNA Interactions from Single-Cell Chromatin Accessibility Data
- (2018) Hannah A. Pliner et al. MOLECULAR CELL
- Joint profiling of chromatin accessibility and gene expression in thousands of single cells
- (2018) Junyue Cao et al. SCIENCE
- A chromatin integration labelling method enables epigenomic profiling with lower input
- (2018) Akihito Harada et al. NATURE CELL BIOLOGY
- Simultaneous mapping of active DNA demethylation and sister chromatid exchange in single cells
- (2017) Xiaoji Wu et al. GENES & DEVELOPMENT
- SOX9 Is an Astrocyte-Specific Nuclear Marker in the Adult Brain Outside the Neurogenic Regions
- (2017) Wei Sun et al. JOURNAL OF NEUROSCIENCE
- Multiplexed quantification of proteins and transcripts in single cells
- (2017) Vanessa M Peterson et al. NATURE BIOTECHNOLOGY
- Integrative single-cell analysis of transcriptional and epigenetic states in the human adult brain
- (2017) Blue B Lake et al. NATURE BIOTECHNOLOGY
- chromVAR: inferring transcription-factor-associated accessibility from single-cell epigenomic data
- (2017) Alicia N Schep et al. NATURE METHODS
- Simultaneous epitope and transcriptome measurement in single cells
- (2017) Marlon Stoeckius et al. NATURE METHODS
- JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework
- (2017) Aziz Khan et al. NUCLEIC ACIDS RESEARCH
- Comprehensive single-cell transcriptional profiling of a multicellular organism
- (2017) Junyue Cao et al. SCIENCE
- Single-cell methylomes identify neuronal subtypes and regulatory elements in mammalian cortex
- (2017) Chongyuan Luo et al. SCIENCE
- Single-cell epigenomics: Recording the past and predicting the future
- (2017) Gavin Kelsey et al. SCIENCE
- Simultaneous measurement of chromatin accessibility, DNA methylation, and nucleosome phasing in single cells
- (2017) Sebastian Pott eLife
- Single-cell triple omics sequencing reveals genetic, epigenetic and transcriptomic heterogeneity in hepatocellular carcinomas
- (2016) Yu Hou et al. CELL RESEARCH
- Mapping of long-range chromatin interactions by proximity ligation-assisted ChIP-seq
- (2016) Rongxin Fang et al. CELL RESEARCH
- Single-cell 5hmC sequencing reveals chromosome-wide cell-to-cell variability and enables lineage reconstruction
- (2016) Dylan Mooijman et al. NATURE BIOTECHNOLOGY
- Diffusion pseudotime robustly reconstructs lineage branching
- (2016) Laleh Haghverdi et al. NATURE METHODS
- Parallel single-cell sequencing links transcriptional and epigenetic heterogeneity
- (2016) Christof Angermueller et al. NATURE METHODS
- Adult mouse cortical cell taxonomy revealed by single cell transcriptomics
- (2016) Bosiljka Tasic et al. NATURE NEUROSCIENCE
- destiny: diffusion maps for large-scale single-cell data in R
- (2015) Philipp Angerer et al. BIOINFORMATICS
- Droplet Barcoding for Single-Cell Transcriptomics Applied to Embryonic Stem Cells
- (2015) Allon M. Klein et al. CELL
- Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets
- (2015) Evan Z. Macosko et al. CELL
- Genome-wide detection of DNase I hypersensitive sites in single cells and FFPE tissue samples
- (2015) Wenfei Jin et al. NATURE
- Single-cell chromatin accessibility reveals principles of regulatory variation
- (2015) Jason D. Buenrostro et al. NATURE
- Single-cell ChIP-seq reveals cell subpopulations defined by chromatin state
- (2015) Assaf Rotem et al. NATURE BIOTECHNOLOGY
- Integrated genome and transcriptome sequencing of the same cell
- (2015) Siddharth S Dey et al. NATURE BIOTECHNOLOGY
- G&T-seq: parallel sequencing of single-cell genomes and transcriptomes
- (2015) Iain C Macaulay et al. NATURE METHODS
- Multiplex single-cell profiling of chromatin accessibility by combinatorial cellular indexing
- (2015) D. A. Cusanovich et al. SCIENCE
- A comparative encyclopedia of DNA elements in the mouse genome
- (2014) Feng Yue et al. NATURE
- Single-cell genome-wide bisulfite sequencing for assessing epigenetic heterogeneity
- (2014) Sébastien A Smallwood et al. NATURE METHODS
- TELP, a sensitive and versatile library construction method for next-generation sequencing
- (2014) Xu Peng et al. NUCLEIC ACIDS RESEARCH
- deepTools: a flexible platform for exploring deep-sequencing data
- (2014) Fidel Ramírez et al. NUCLEIC ACIDS RESEARCH
- Single-cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed using reduced representation bisulfite sequencing
- (2013) H. Guo et al. GENOME RESEARCH
- Topology of mammalian developmental enhancers and their regulatory landscapes
- (2013) Wouter de Laat et al. NATURE
- Single-cell Hi-C reveals cell-to-cell variability in chromosome structure
- (2013) Takashi Nagano et al. NATURE
- Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position
- (2013) Jason D Buenrostro et al. NATURE METHODS
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation
- (2012) Davis J. McCarthy et al. NUCLEIC ACIDS RESEARCH
- Molecular Control of Neurogenesis: A View from the Mammalian Cerebral Cortex
- (2012) B. Martynoga et al. Cold Spring Harbor Perspectives in Biology
- Unfolding communities in large complex networks: Combining defensive and offensive label propagation for core extraction
- (2011) Lovro Šubelj et al. PHYSICAL REVIEW E
- Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities
- (2010) Sven Heinz et al. MOLECULAR CELL
- SOX5 Controls the Sequential Generation of Distinct Corticofugal Neuron Subtypes
- (2008) Tina Lai et al. NEURON
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