CLIJ: GPU-accelerated image processing for everyone

3Dscript: animating 3D/4D microscopy data using a natural-language-based syntax

(2019) Benjamin Schmid et al.   NATURE METHODS

NanoJ: a high-performance open-source super-resolution microscopy toolbox

(2019) Romain F Laine et al.   JOURNAL OF PHYSICS D-APPLIED PHYSICS

Quantitative mapping and minimization of super-resolution optical imaging artifacts

(2018) Siân Culley et al.   NATURE METHODS

Content-aware image restoration: pushing the limits of fluorescence microscopy

(2018) Martin Weigert et al.   NATURE METHODS

U-Net: deep learning for cell counting, detection, and morphometry

(2018) Thorsten Falk et al.   NATURE METHODS

Efficient Bayesian-based multiview deconvolution

(2014) Stephan Preibisch et al.   NATURE METHODS

Fiji: an open-source platform for biological-image analysis

(2012) Johannes Schindelin et al.   NATURE METHODS

NIH Image to ImageJ: 25 years of image analysis

(2012) Caroline A Schneider et al.   NATURE METHODS