标题
A computational framework to explore large-scale biosynthetic diversity
作者
关键词
-
出版物
Nature Chemical Biology
Volume 16, Issue 1, Pages 60-68
出版商
Springer Science and Business Media LLC
发表日期
2019-11-26
DOI
10.1038/s41589-019-0400-9
参考文献
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注意：仅列出部分参考文献，下载原文获取全部文献信息。- The complete genomic sequence of Streptomyces spectabilis NRRL-2792 and identification of secondary metabolite biosynthetic gene clusters
- (2019) Arkadeep Sinha et al. JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY
- Discovery of the Tyrobetaine Natural Products and Their Biosynthetic Gene Cluster via Metabologenomics
- (2018) Elizabeth I. Parkinson et al. ACS Chemical Biology
- Metagenomic discovery of polybrominated diphenyl ether biosynthesis by marine sponges
- (2017) Vinayak Agarwal et al. Nature Chemical Biology
- PRISM 3: expanded prediction of natural product chemical structures from microbial genomes
- (2017) Michael A. Skinnider et al. NUCLEIC ACIDS RESEARCH
- antiSMASH 4.0—improvements in chemistry prediction and gene cluster boundary identification
- (2017) Kai Blin et al. NUCLEIC ACIDS RESEARCH
- Comparative genomics uncovers the prolific and distinctive metabolic potential of the cyanobacterial genusMoorea
- (2017) Tiago Leao et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Retrospective analysis of natural products provides insights for future discovery trends
- (2017) Cameron R. Pye et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life
- (2017) Donovan H. Parks et al. Nature Microbiology
- Global analysis of biosynthetic gene clusters reveals vast potential of secondary metabolite production in Penicillium species
- (2017) Jens Christian Nielsen et al. Nature Microbiology
- Natural product diversity associated with the nematode symbionts Photorhabdus and Xenorhabdus
- (2017) Nicholas J. Tobias et al. Nature Microbiology
- Large-Scale Bioinformatics Analysis of Bacillus Genomes Uncovers Conserved Roles of Natural Products in Bacterial Physiology
- (2017) Kirk J. Grubbs et al. mSystems
- Elucidating the Rimosamide-Detoxin Natural Product Families and Their Biosynthesis Using Metabolite/Gene Cluster Correlations
- (2016) Ryan A. McClure et al. ACS Chemical Biology
- New Aspercryptins, Lipopeptide Natural Products, Revealed by HDAC Inhibition in Aspergillus nidulans
- (2016) Matthew T. Henke et al. ACS Chemical Biology
- Phylogenomic Analysis of Natural Products Biosynthetic Gene Clusters Allows Discovery of Arseno-Organic Metabolites in Model Streptomycetes
- (2016) Pablo Cruz-Morales et al. Genome Biology and Evolution
- Natural product discovery: past, present, and future
- (2016) Leonard Katz et al. JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY
- Polyketide and nonribosomal peptide retro-biosynthesis and global gene cluster matching
- (2016) Chris A Dejong et al. Nature Chemical Biology
- Metabologenomics: Correlation of Microbial Gene Clusters with Metabolites Drives Discovery of a Nonribosomal Peptide with an Unusual Amino Acid Monomer
- (2016) Anthony W. Goering et al. ACS Central Science
- Molecular Networking and Pattern-Based Genome Mining Improves Discovery of Biosynthetic Gene Clusters and their Products from Salinispora Species
- (2015) Katherine R. Duncan et al. CHEMISTRY & BIOLOGY
- Natural products in soil microbe interactions and evolution
- (2015) Matthew F. Traxler et al. NATURAL PRODUCT REPORTS
- Computational approaches to natural product discovery
- (2015) Marnix H Medema et al. Nature Chemical Biology
- antiSMASH 3.0—a comprehensive resource for the genome mining of biosynthetic gene clusters
- (2015) Tilmann Weber et al. NUCLEIC ACIDS RESEARCH
- Multiplexed metagenome mining using short DNA sequence tags facilitates targeted discovery of epoxyketone proteasome inhibitors
- (2015) Jeremy G. Owen et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- An automated Genomes-to-Natural Products platform (GNP) for the discovery of modular natural products
- (2015) Chad W. Johnston et al. Nature Communications
- Automated Genome Mining of Ribosomal Peptide Natural Products
- (2014) Hosein Mohimani et al. ACS Chemical Biology
- Insights into Secondary Metabolism from a Global Analysis of Prokaryotic Biosynthetic Gene Clusters
- (2014) Peter Cimermancic et al. CELL
- NRPquest: Coupling Mass Spectrometry and Genome Mining for Nonribosomal Peptide Discovery
- (2014) Hosein Mohimani et al. JOURNAL OF NATURAL PRODUCTS
- A roadmap for natural product discovery based on large-scale genomics and metabolomics
- (2014) James R Doroghazi et al. Nature Chemical Biology
- Diversity and evolution of secondary metabolism in the marine actinomycete genus Salinispora
- (2014) N. Ziemert et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A Systematic Computational Analysis of Biosynthetic Gene Cluster Evolution: Lessons for Engineering Biosynthesis
- (2014) Marnix H. Medema et al. PLoS Computational Biology
- Pep2Path: Automated Mass Spectrometry-Guided Genome Mining of Peptidic Natural Products
- (2014) Marnix H. Medema et al. PLoS Computational Biology
- Specialized microbial metabolites: functions and origins
- (2013) Julian Davies JOURNAL OF ANTIBIOTICS
- MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
- (2013) K. Katoh et al. MOLECULAR BIOLOGY AND EVOLUTION
- antiSMASH 2.0—a versatile platform for genome mining of secondary metabolite producers
- (2013) Kai Blin et al. NUCLEIC ACIDS RESEARCH
- MS/MS networking guided analysis of molecule and gene cluster families
- (2013) D. D. Nguyen et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
- (2012) Anton Bankevich et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- Mass spectral molecular networking of living microbial colonies
- (2012) J. Watrous et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Metagenome Mining Reveals Polytheonamides as Posttranslationally Modified Ribosomal Peptides
- (2012) M. F. Freeman et al. SCIENCE
- antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences
- (2011) Marnix H. Medema et al. NUCLEIC ACIDS RESEARCH
- The Pfam protein families database
- (2011) M. Punta et al. NUCLEIC ACIDS RESEARCH
- The Newick utilities: high-throughput phylogenetic tree processing in the UNIX shell
- (2010) T. Junier et al. BIOINFORMATICS
- FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix
- (2009) M. N. Price et al. MOLECULAR BIOLOGY AND EVOLUTION
- The Gene Cluster for Spectinomycin Biosynthesis and the Aminoglycoside-Resistance Function of spcM in Streptomyces spectabilis
- (2008) Kyoung-Rok Kim et al. CURRENT MICROBIOLOGY
- The evolution of gene collectives: How natural selection drives chemical innovation
- (2008) M. A. Fischbach et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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