Hybridization between two parapatric ranid frog species in the northern Sierra Nevada, California, USA

A Lentic Breeder in Lotic Waters: Sierra Nevada Yellow-Legged Frog (Rana sierrae) Habitat Suitability in Northern Sierra Nevada Streams

(2019) Sarah M. Yarnell et al.   COPEIA

Population genomic data reveal extreme geographic subdivision and novel conservation actions for the declining foothill yellow-legged frog

(2018) Evan McCartney-Melstad et al.   HEREDITY

Paternal chromosome loss and metabolic crisis contribute to hybrid inviability in Xenopus

(2018) Romain Gibeaux et al.   NATURE

A Versatile Rapture (RAD-Capture) Platform for Genotyping Marine Turtles

(2018) Lisa Komoroske et al.   Molecular Ecology Resources

Disease and climate effects on individuals drive post‐reintroduction population dynamics of an endangered amphibian

(2018) Maxwell B. Joseph et al.   Ecosphere

Demographic modelling reveals a history of divergence with gene flow for a glacially tied stonefly in a changing post-Pleistocene landscape

(2017) Scott Hotaling et al.   JOURNAL OF BIOGEOGRAPHY

Hybrid speciation leads to novel male secondary sexual ornamentation of an Amazonian bird

(2017) Alfredo O. Barrera-Guzmán et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Failure to differentiate between divergence of species and their genes can result in over-estimation of mutation rates in recently diverged species

(2017) İsmail K. Sağlam et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Interspecies introgressive hybridization in spiny frogs Quasipaa (Family Dicroglossidae) revealed by analyses on multiple mitochondrial and nuclear genes

(2017) Qi-Peng Zhang et al.   Ecology and Evolution

Ten Years of Landscape Genomics: Challenges and Opportunities

(2017) Yong Li et al.   Frontiers in Plant Science

The evolutionary basis of premature migration in Pacific salmon highlights the utility of genomics for informing conservation

(2017) Daniel J. Prince et al.   Science Advances

Modeling potential river management conflicts between frogs and salmonids

(2016) Steven F. Railsback et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Phylogenetics support an ancient common origin of two scientific icons: Devils Hole and Devils Hole pupfish

(2016) İsmaİl K. Sağlam et al.   MOLECULAR ECOLOGY

Large-scale recovery of an endangered amphibian despite ongoing exposure to multiple stressors

(2016) Roland A. Knapp et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Spatiotemporal Diversification of the True Frogs (GenusRana): A Historical Framework for a Widely Studied Group of Model Organisms

(2016) Zhi-Yong Yuan et al.   SYSTEMATIC BIOLOGY

Introgressive Hybridization and the Evolution of Lake-Adapted Catostomid Fishes

(2016) Thomas E. Dowling et al.   PLoS One

RAD Capture (Rapture): Flexible and Efficient Sequence-Based Genotyping

(2015) O. A. Ali et al.   GENETICS

Amphibian molecular ecology and how it has informed conservation

(2015) Evan McCartney-Melstad et al.   MOLECULAR ECOLOGY

Conservation Genetics and Genomics of Amphibians and Reptiles

(2015) H. Bradley Shaffer et al.   Annual Review of Animal Biosciences

ANGSD: Analysis of Next Generation Sequencing Data

(2014) Thorfinn Sand Korneliussen et al.   BMC BIOINFORMATICS

Diversification and asymmetrical gene flow across time and space: lineage sorting and hybridization in polytypic barking frogs

(2014) Jeffrey W. Streicher et al.   MOLECULAR ECOLOGY

The importance of thermal conditions to recruitment success in stream-breeding frog populations distributed across a productivity gradient

(2013) Alessandro Catenazzi et al.   BIOLOGICAL CONSERVATION

Calculation of Tajima’s D and other neutrality test statistics from low depth next-generation sequencing data

(2013) Thorfinn Sand Korneliussen et al.   BMC BIOINFORMATICS

Evolutionary dynamics of a rapidly receding southern range boundary in the threatened California Red-Legged Frog (Rana draytonii)

(2013) Jonathan Q. Richmond et al.   Evolutionary Applications

Quantifying Population Genetic Differentiation from Next-Generation Sequencing Data

(2013) Matteo Fumagalli et al.   GENETICS

Estimating Individual Admixture Proportions from Next Generation Sequencing Data

(2013) Line Skotte et al.   GENETICS

Rangewide glaciation in the Sierra Nevada, California

(2013) James G. Moore et al.   Geosphere

Hybridization and speciation

(2013) R. Abbott et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Hybridization promotes color polymorphism in the aposematic harlequin poison frog,Oophaga histrionica

(2013) Iliana Medina et al.   Ecology and Evolution

PRICE: Software for the Targeted Assembly of Components of (Meta) Genomic Sequence Data

(2013) J. Graham Ruby et al.   G3-Genes Genomes Genetics

Robust Demographic Inference from Genomic and SNP Data

(2013) Laurent Excoffier et al.   PLoS Genetics

Estimating ancestry and heterozygosity of hybrids using molecular markers

(2012) Benjamin M Fitzpatrick   BMC EVOLUTIONARY BIOLOGY

Effects of Flow Regimes Altered by Dams on Survival, Population Declines, and Range-Wide Losses of California River-Breeding Frogs

(2012) SARAH J. KUPFERBERG et al.   CONSERVATION BIOLOGY

Current and Historical Drivers of Landscape Genetic Structure Differ in Core and Peripheral Salamander Populations

(2012) Rachael Y. Dudaniec et al.   PLoS One

fastsimcoal: a continuous-time coalescent simulator of genomic diversity under arbitrarily complex evolutionary scenarios

(2011) Laurent Excoffier et al.   BIOINFORMATICS

Estimation of allele frequency and association mapping using next-generation sequencing data

(2011) Su Kim et al.   BMC BIOINFORMATICS

A conserved haplotype controls parallel adaptation in geographically distant salmonid populations

(2011) MICHAEL R. MILLER et al.   MOLECULAR ECOLOGY

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

Rangewide phylogeography and landscape genetics of the Western U.S. endemic frog Rana boylii (Ranidae): implications for the conservation of frogs and rivers

(2010) Amy J. Lind et al.   CONSERVATION GENETICS

Evolution of the mutation rate

(2010) Michael Lynch   TRENDS IN GENETICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Assessing ethical trade-offs in ecological field studies

(2009) Kirsten M. Parris et al.   JOURNAL OF APPLIED ECOLOGY

Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers

(2008) Nathan A. Baird et al.   PLoS One

Patterns of Reproductive Isolation in Toads

(2008) John H. Malone et al.   PLoS One