Molecular, cellular and Yin-Yang regulation of grain size and number in rice

Control of grain size by G-protein signaling in rice

(2019) Ran Xu et al.   Journal of Integrative Plant Biology

Natural alleles of GLA for grain length and awn development were differently domesticated in rice subspecies japonica and indica

(2019) Yanpei Zhang et al.   PLANT BIOTECHNOLOGY JOURNAL

The basic helix-loop-helix transcription factor, OsPIL15 regulates grain size via directly targeting a purine permease gene OsPUP7 in rice

(2019) Xin Ji et al.   PLANT BIOTECHNOLOGY JOURNAL

The APETALA2-like transcription factor SUPERNUMERARY BRACT controls rice seed shattering and seed size

(2019) Liyun Jiang et al.   PLANT CELL

OsSHI1 Regulates Plant Architecture Through Modulating the Transcriptional Activity of IPA1 in Rice

(2019) Erchao Duan et al.   PLANT CELL

Rice qGL3/OsPPKL1 Functions with the GSK3/SHAGGY-Like Kinase OsGSK3 to Modulate Brassinosteroid Signaling

(2019) Xiuying Gao et al.   PLANT CELL

FON 4 prevents the multi‐floret spikelet in rice

(2019) Deyong Ren et al.   PLANT BIOTECHNOLOGY JOURNAL

A single nucleotide substitution at 5′-UTR of GSN1 represses its translation and leads to an increase of grain length in rice

(2019) Xia Zhang et al.   Journal of Genetics and Genomics

Molecular Networks of Seed Size Control in Plants

(2019) Na Li et al.   Annual Review of Plant Biology

A Missense Mutation in LGS1 Increases Grain Size and Enhances Cold Tolerance in Rice

(2019) Xiaolong Chen et al.   JOURNAL OF EXPERIMENTAL BOTANY

The PLATZ transcription factor GL6 affects grain length and number in rice

(2019) Ahong Wang et al.   PLANT PHYSIOLOGY

The Rho-family GTPase OsRac1 controls rice grain size and yield by regulating cell division

(2019) Ying Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A novel rice grain size gene OsSNB was identified by genome-wide association study in natural population

(2019) Xiaosong Ma et al.   PLoS Genetics

Next-generation strategies for understanding and influencing source–sink relations in crop plants

(2018) Uwe Sonnewald et al.   CURRENT OPINION IN PLANT BIOLOGY

OUP accepted manuscript

(2018)   JOURNAL OF EXPERIMENTAL BOTANY

GL3.3 , a Novel QTL Encoding a GSK3/SHAGGY-like Kinase, Epistatically Interacts with GS3 to Produce Extra-long Grains in Rice

(2018) Duo Xia et al.   Molecular Plant

TGW3 , a Major QTL that Negatively Modulates Grain Length and Weight in Rice

(2018) Jie-Zheng Ying et al.   Molecular Plant

A Novel QTL q TGW3 Encodes the GSK3/SHAGGY-Like Kinase OsGSK5/OsSK41 that Interacts with OsARF4 to Negatively Regulate Grain Size and Weight in Rice

(2018) Zejun Hu et al.   Molecular Plant

Control of Grain Size and Weight by the OsMKKK10-OsMKK4-OsMAPK6 Signaling Pathway in Rice

(2018) Ran Xu et al.   Molecular Plant

Alternative splicing of OsLG3b controls grain length and yield in japonica rice

(2018) Jianping Yu et al.   PLANT BIOTECHNOLOGY JOURNAL

GRAIN SIZE AND NUMBER1Negatively Regulates the OsMKKK10-OsMKK4-OsMPK6 Cascade to Coordinate the Trade-off between Grain Number per Panicle and Grain Size in Rice

(2018) Tao Guo et al.   PLANT CELL

A mitogen-activated protein kinase phosphatase influences grain size and weight in rice

(2018) Ran Xu et al.   PLANT JOURNAL

Grass inflorescence architecture and meristem determinacy

(2018) Peter Bommert et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Overexpression of OsbHLH107, a member of the basic helix-loop-helix transcription factor family, enhances grain size in rice (Oryza sativa L.)

(2018) Xiaoming Yang et al.   Rice

A G-protein pathway determines grain size in rice

(2018) Shengyuan Sun et al.   Nature Communications

GS9 acts as a transcriptional activator to regulate rice grain shape and appearance quality

(2018) Dong-Sheng Zhao et al.   Nature Communications

G-protein βγ subunits determine grain size through interaction with MADS-domain transcription factors in rice

(2018) Qian Liu et al.   Nature Communications

Phylogenetic and CRISPR/Cas9 Studies in Deciphering the Evolutionary Trajectory and Phenotypic Impacts of Rice ERECTA Genes

(2018) Yanchun Zhang et al.   Frontiers in Plant Science

Control of grain size in rice

(2018) Na Li et al.   Plant Reproduction

Big Grain3 , encoding a purine permease, regulates grain size via modulating cytokinin transport in rice

(2018) Yunhua Xiao et al.   Journal of Integrative Plant Biology

Variation in the regulatory region of FZP causes increases in secondary inflorescence branching and grain yield in rice domestication

(2018) Yongyu Huang et al.   PLANT JOURNAL

Overexpressing lncRNA LAIR increases grain yield and regulates neighbouring gene cluster expression in rice

(2018) Ying Wang et al.   Nature Communications

Comprehensive panicle phenotyping reveals that qSrn7/FZP influences higher-order branching

(2018) Yasuko Fujishiro et al.   Scientific Reports

Panicle Morphology Mutant 1 (PMM1) determines the inflorescence architecture of rice by controlling brassinosteroid biosynthesis

(2018) Yan Li et al.   BMC PLANT BIOLOGY

Characterization of Heterotrimeric G Protein γ4 Subunit in Rice

(2018) Sakura Matsuta et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Systems model-guided rice yield improvements based on genes controlling source, sink, and flow

(2018) Pan Li et al.   Journal of Integrative Plant Biology

GRAIN LENGTH AND AWN 1 negatively regulates grain size in rice

(2018) Tao Wang et al.   Journal of Integrative Plant Biology

Source–sink interaction: a century old concept under the light of modern molecular systems biology

(2017) Tian-Gen Chang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Dwarf and short grain 1 , encoding a putative U-box protein regulates cell division and elongation in rice

(2017) Nan Wang et al.   JOURNAL OF PLANT PHYSIOLOGY

Natural Variation in the Promoter of GSE5 Contributes to Grain Size Diversity in Rice

(2017) Penggen Duan et al.   Molecular Plant

Tissue-Specific Ubiquitination by IPA1 INTERACTING PROTEIN1 Modulates IPA1 Protein Levels to Regulate Plant Architecture in Rice

(2017) Jing Wang et al.   PLANT CELL

WIDE AND THICK GRAIN 1 , which encodes an otubain-like protease with deubiquitination activity, influences grain size and shape in rice

(2017) Ke Huang et al.   PLANT JOURNAL

Transcription Factor OsWRKY53 Positively Regulates Brassinosteroid Signaling and Plant Architecture

(2017) Xiaojie Tian et al.   PLANT PHYSIOLOGY

08SG2/OsBAK1 regulates grain size and number, and functions differently in Indica and Japonica backgrounds in rice

(2017) Hua Yuan et al.   Rice

GNS4, a novel allele of DWARF11, regulates grain number and grain size in a high-yield rice variety

(2017) Yong Zhou et al.   Rice

Yin-yang regulating effects of cancer-associated genes, proteins, and cells: An ancient Chinese concept in vogue in modern cancer research

(2017) Shuyong Wei   BioScience Trends

A natural tandem array alleviates epigenetic repression of IPA1 and leads to superior yielding rice

(2017) Lin Zhang et al.   Nature Communications

HvDep1 Is a Positive Regulator of Culm Elongation and Grain Size in Barley and Impacts Yield in an Environment-Dependent Manner

(2017) Toni Wendt et al.   PLoS One

Cell Geometry: How Cells Count and Measure Size

(2016) Wallace F Marshall   Annual Review of Biophysics

Mechanisms of auxin signaling

(2016) Meirav Lavy et al.   DEVELOPMENT

CLAVATA-WUSCHEL signaling in the shoot meristem

(2016) Marc Somssich et al.   DEVELOPMENT

OsGRF4controls grain shape, panicle length and seed shattering in rice

(2016) Pingyong Sun et al.   Journal of Integrative Plant Biology

OsSPL13 controls grain size in cultivated rice

(2016) Lizhen Si et al.   NATURE GENETICS

The OsmiR396c-OsGRF4-OsGIF1 regulatory module determines grain size and yield in rice

(2016) Shuangcheng Li et al.   PLANT BIOTECHNOLOGY JOURNAL

GAD1Encodes a Secreted Peptide That Regulates Grain Number, Grain Length, and Awn Development in Rice Domestication

(2016) Jing Jin et al.   PLANT CELL

Hd1,aCONSTANSortholog in rice, functions as anEhd1repressor through interaction with monocot-specific CCT-domain protein Ghd7

(2016) Yasue Nemoto et al.   PLANT JOURNAL

Loss of function atRAE2, a previously unidentified EPFL, is required for awnlessness in cultivated Asian rice

(2016) Kanako Bessho-Uehara et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Yin–Yang of Cytokinin Homeostasis and Drought Acclimation/Adaptation

(2016) Weiqiang Li et al.   TRENDS IN PLANT SCIENCE

SMALL GRAIN 11 Controls Grain Size, Grain Number and Grain Yield in Rice

(2016) Na Fang et al.   Rice

OVATE Family Protein 8 Positively Mediates Brassinosteroid Signaling through Interacting with the GSK3-like Kinase in Rice

(2016) Chao Yang et al.   PLoS Genetics

Regulatory role of FZP in the determination of panicle branching and spikelet formation in rice

(2016) Xufeng Bai et al.   Scientific Reports

OsSGL, a novel pleiotropic stress-related gene enhances grain length and yield in rice

(2016) Manling Wang et al.   Scientific Reports

Differential expression of GS5 regulates grain size in rice

(2015) Chunjue Xu et al.   JOURNAL OF EXPERIMENTAL BOTANY

How can we make plants grow faster? A source–sink perspective on growth rate

(2015) Angela C. White et al.   JOURNAL OF EXPERIMENTAL BOTANY

MONOCULM 3, an Ortholog of WUSCHEL in Rice, Is Required for Tiller Bud Formation

(2015) Zefu Lu et al.   Journal of Genetics and Genomics

An-2 Encodes a Cytokinin Synthesis Enzyme that Regulates Awn Length and Grain Production in Rice

(2015) Benguo Gu et al.   Molecular Plant

A Rare Allele of GS2 Enhances Grain Size and Grain Yield in Rice

(2015) Jiang Hu et al.   Molecular Plant

Competitive binding of antagonistic peptides fine-tunes stomatal patterning

(2015) Jin Suk Lee et al.   NATURE

Copy number variation at the GL7 locus contributes to grain size diversity in rice

(2015) Yuexing Wang et al.   NATURE GENETICS

The OsSPL16-GW7 regulatory module determines grain shape and simultaneously improves rice yield and grain quality

(2015) Shaokui Wang et al.   NATURE GENETICS

CLUSTERED PRIMARY BRANCH 1 , a new allele of DWARF11 , controls panicle architecture and seed size in rice

(2015) Yongzhen Wu et al.   PLANT BIOTECHNOLOGY JOURNAL

TaGS5-3A,a grain size gene selected during wheat improvement for larger kernel and yield

(2015) Lin Ma et al.   PLANT BIOTECHNOLOGY JOURNAL

Axillary Meristem Formation in Rice Requires theWUSCHELOrthologTILLERS ABSENT1

(2015) Wakana Tanaka et al.   PLANT CELL

Regulation of Histone Methylation and Reprogramming of Gene Expression in the Rice Inflorescence Meristem

(2015) Xiaoyun Liu et al.   PLANT CELL

The Yin-Yang of Hormones: Cytokinin and Auxin Interactions in Plant Development

(2015) G. Eric Schaller et al.   PLANT CELL

OsMAPK6, a mitogen-activated protein kinase, influences rice grain size and biomass production

(2015) Shuying Liu et al.   PLANT JOURNAL

PAY1improves plant architecture and enhances grain yield in rice

(2015) Lei Zhao et al.   PLANT JOURNAL

Epigenetic Mutation of RAV6 Affects Leaf Angle and Seed Size in Rice

(2015) Song Xianwei et al.   PLANT PHYSIOLOGY

Breeding signatures of rice improvement revealed by a genomic variation map from a large germplasm collection

(2015) Weibo Xie et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Coordinated regulation of vegetative and reproductive branching in rice

(2015) Lei Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Activation ofBig Grain1significantly improves grain size by regulating auxin transport in rice

(2015) Linchuan Liu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Source–Sink Communication: Regulated by Hormone, Nutrient, and Stress Cross-Signaling

(2015) Su-May Yu et al.   TRENDS IN PLANT SCIENCE

Regulation of OsGRF4 by OsmiR396 controls grain size and yield in rice

(2015) Penggen Duan et al.   Nature Plants

Blocking miR396 increases rice yield by shaping inflorescence architecture

(2015) Feng Gao et al.   Nature Plants

Control of grain size and rice yield by GL2-mediated brassinosteroid responses

(2015) Ronghui Che et al.   Nature Plants

Molecular Genetic Dissection of Quantitative Trait Loci Regulating Rice Grain Size

(2014) Jianru Zuo et al.   Annual Review of Genetics

Molecular Control of Grass Inflorescence Development

(2014) Dabing Zhang et al.   Annual Review of Plant Biology

Heterotrimeric G proteins regulate nitrogen-use efficiency in rice

(2014) Hongying Sun et al.   NATURE GENETICS

Grain Number, Plant Height, and Heading Date7 Is a Central Regulator of Growth, Development, and Stress Response

(2014) X. Weng et al.   PLANT PHYSIOLOGY

Correction for Gao et al.,Days to heading 7, a major quantitative locus determining photoperiod sensitivity and regional adaptation in rice

(2014)   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Rare allele of a previously unidentified histone H4 acetyltransferase enhances grain weight, yield, and plant biomass in rice

(2014) Xian Jun Song et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Rice miR172 induces flowering by suppressing OsIDS1 and SNB, two AP2 genes that negatively regulate expression of Ehd1 and florigens

(2014) Yang-Seok Lee et al.   Rice

Multiple and independent origins of short seeded alleles of GS3 in rice

(2013) Noriko Takano-Kai et al.   BREEDING SCIENCE

Natural variation in Ghd7.1 plays an important role in grain yield and adaptation in rice

(2013) Wenhao Yan et al.   CELL RESEARCH

Regulation of plant lateral-organ growth by modulating cell number and size

(2013) Jo Hepworth et al.   CURRENT OPINION IN PLANT BIOLOGY

GS6, A Member of the GRAS Gene Family, Negatively Regulates Grain Size in Rice

(2013) Lianjun Sun et al.   Journal of Integrative Plant Biology

Characterization of a Purine Permease Family GeneOsPUP7Involved in Growth and Development Control in Rice

(2013) Zhuyun Qi et al.   Journal of Integrative Plant Biology

Natural Variation in OsPRR37 Regulates Heading Date and Contributes to Rice Cultivation at a Wide Range of Latitudes

(2013) Bon-Hyuk Koo et al.   Molecular Plant

Overexpression of microRNA OsmiR397 improves rice yield by increasing grain size and promoting panicle branching

(2013) Yu-Chan Zhang et al.   NATURE BIOTECHNOLOGY

Loss of function of the IAA-glucose hydrolase gene TGW6 enhances rice grain weight and increases yield

(2013) Ken Ishimaru et al.   NATURE GENETICS

Genome-Wide Binding Analysis of the Transcription Activator IDEAL PLANT ARCHITECTURE1 Reveals a Complex Network Regulating Rice Plant Architecture

(2013) Z. Lu et al.   PLANT CELL

An-1 Encodes a Basic Helix-Loop-Helix Protein That Regulates Awn Development, Grain Size, and Grain Number in Rice

(2013) J. Luo et al.   PLANT CELL

SMALL GRAIN 1, which encodes a mitogen-activated protein kinase kinase 4, influences grain size in rice

(2013) Penggen Duan et al.   PLANT JOURNAL

Rice LHS1/OsMADS1 Controls Floret Meristem Specification by Coordinated Regulation of Transcription Factors and Hormone Signaling Pathways

(2013) I. Khanday et al.   PLANT PHYSIOLOGY

Rice zinc finger protein DST enhances grain production through controlling Gn1a/OsCKX2 expression

(2013) S. Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Control of transposon activity by a histone H3K4 demethylase in rice

(2013) X. Cui et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The U-Box E3 Ubiquitin Ligase TUD1 Functions with a Heterotrimeric G α Subunit to Regulate Brassinosteroid-Mediated Growth in Rice

(2013) Xingming Hu et al.   PLoS Genetics

Fine Mapping and Cloning of the Grain Number Per-Panicle Gene (Gnp4) on Chromosome 4 in Rice (Oryza sativa L.)

(2012) Zhan-ying ZHANG et al.   Agricultural Sciences in China

The novel quantitative trait locus GL3.1 controls rice grain size and yield by regulating Cyclin-T1;3

(2012) Peng Qi et al.   CELL RESEARCH

Four AUXIN RESPONSE FACTOR genes downregulated by microRNA167 are associated with growth and development in Oryza sativa

(2012) Hai Liu et al.   FUNCTIONAL PLANT BIOLOGY

Direct interaction of ligand-receptor pairs specifying stomatal patterning

(2012) J. S. Lee et al.   GENES & DEVELOPMENT

A Kelch Motif-Containing Serine/Threonine Protein Phosphatase Determines the Large Grain QTL Trait in Rice

(2012) Zejun Hu et al.   Journal of Integrative Plant Biology

Control of grain size, shape and quality by OsSPL16 in rice

(2012) Shaokui Wang et al.   NATURE GENETICS

DWARF AND LOW-TILLERING Acts as a Direct Downstream Target of a GSK3/SHAGGY-Like Kinase to Mediate Brassinosteroid Responses in Rice

(2012) Hongning Tong et al.   PLANT CELL

A MAPK Cascade Downstream of ERECTA Receptor-Like Protein Kinase Regulates Arabidopsis Inflorescence Architecture by Promoting Localized Cell Proliferation

(2012) X. Meng et al.   PLANT CELL

Antagonistic Actions of HLH/bHLH Proteins Are Involved in Grain Length and Weight in Rice

(2012) Dany Heang et al.   PLoS One

Rice phytochrome-interacting factor-like protein OsPIL1 functions as a key regulator of internode elongation and induces a morphological response to drought stress

(2012) D. Todaka et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Rare allele of OsPPKL1 associated with grain length causes extra-large grain and a significant yield increase in rice

(2012) X. Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Can heterotrimeric G proteins help to feed the world?

(2012) José Ramón Botella   TRENDS IN PLANT SCIENCE

A loss-of-function mutation of rice DENSE PANICLE 1 causes semi-dwarfness and slightly increased number of spikelets

(2011) Fumio Taguchi-Shiobara et al.   BREEDING SCIENCE

Natural variation in GS5 plays an important role in regulating grain size and yield in rice

(2011) Yibo Li et al.   NATURE GENETICS

Flowering Time Genes Heading date 1 and Early heading date 1 Together Control Panicle Development in Rice

(2011) Naokuni Endo-Higashi et al.   PLANT AND CELL PHYSIOLOGY

Mutations in the F-box gene LARGER PANICLE improve the panicle architecture and enhance the grain yield in rice

(2011) Ming Li et al.   PLANT BIOTECHNOLOGY JOURNAL

LAX PANICLE2of Rice Encodes a Novel Nuclear Protein and Regulates the Formation of Axillary Meristems

(2011) Hiroaki Tabuchi et al.   PLANT CELL

Massive Analysis of Rice Small RNAs: Mechanistic Implications of Regulated MicroRNAs and Variants for Differential Target RNA Cleavage

(2011) D.-H. Jeong et al.   PLANT CELL

Suppression of the rice heterotrimeric G protein β-subunit gene, RGB1, causes dwarfism and browning of internodes and lamina joint regions

(2011) Yuzuko Utsunomiya et al.   PLANT JOURNAL

Two AP2 family genes, SUPERNUMERARY BRACT (SNB) and OsINDETERMINATE SPIKELET 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice

(2011) Dong-Yeon Lee et al.   PLANT JOURNAL

Genetic and Molecular Bases of Rice Yield

(2010) Yongzhong Xing et al.   Annual Review of Plant Biology

A Major QTL, Ghd8, Plays Pleiotropic Roles in Regulating Grain Productivity, Plant Height, and Heading Date in Rice

(2010) Wen-Hao Yan et al.   Molecular Plant

Regulation of OsSPL14 by OsmiR156 defines ideal plant architecture in rice

(2010) Yongqing Jiao et al.   NATURE GENETICS

OsSPL14 promotes panicle branching and higher grain productivity in rice

(2010) Kotaro Miura et al.   NATURE GENETICS

DTH8 Suppresses Flowering in Rice, Influencing Plant Height and Yield Potential Simultaneously

(2010) X. Wei et al.   PLANT PHYSIOLOGY

Linking differential domain functions of the GS3 protein to natural variation of grain size in rice

(2010) H. Mao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

New approach for rice improvement using a pleiotropic QTL gene for lodging resistance and yield

(2010) Taiichiro Ookawa et al.   Nature Communications

Deletion in a Quantitative Trait Gene qPE9-1 Associated With Panicle Erectness Improves Plant Architecture During Rice Domestication

(2009) Y. Zhou et al.   GENETICS

Evolutionary History of GS3 , a Gene Conferring Grain Length in Rice

(2009) Noriko Takano-Kai et al.   GENETICS

Natural variation at the DEP1 locus enhances grain yield in rice

(2009) Xianzhong Huang et al.   NATURE GENETICS

EngineeringOsBAK1gene as a molecular tool to improve rice architecture for high yield

(2009) Dan Li et al.   PLANT BIOTECHNOLOGY JOURNAL

DWARF AND LOW-TILLERING, a new member of the GRAS family, plays positive roles in brassinosteroid signaling in rice

(2009) Hongning Tong et al.   PLANT JOURNAL

Expression Level of ABERRANT PANICLE ORGANIZATION1 Determines Rice Inflorescence Form through Control of Cell Proliferation in the Meristem

(2009) K. Ikeda-Kawakatsu et al.   PLANT PHYSIOLOGY

Isolation and initial characterization of GW5, a major QTL associated with rice grain width and weight

(2008) Jianfeng Weng et al.   CELL RESEARCH

Natural variation in Ghd7 is an important regulator of heading date and yield potential in rice

(2008) Weiya Xue et al.   NATURE GENETICS

Deletion in a gene associated with grain size increased yields during rice domestication

(2008) Ayahiko Shomura et al.   NATURE GENETICS

Function of the   Subunit of Rice Heterotrimeric G Protein in Brassinosteroid Signaling

(2008) K. Oki et al.   PLANT AND CELL PHYSIOLOGY