Prospecting for microbial α-N-acetylgalactosaminidases yields a new class of GH31 O-glycanase

Extensive Unexplored Human Microbiome Diversity Revealed by Over 150,000 Genomes from Metagenomes Spanning Age, Geography, and Lifestyle

(2019) Edoardo Pasolli et al.   CELL

Complex N-glycan breakdown by gut Bacteroides involves an extensive enzymatic apparatus encoded by multiple co-regulated genetic loci

(2019) Justina Briliūtė et al.   Nature Microbiology

An enzymatic pathway in the human gut microbiome that converts A to universal O type blood

(2019) Peter Rahfeld et al.   Nature Microbiology

SACCHARIS: an automated pipeline to streamline discovery of carbohydrate active enzyme activities within polyspecific families and de novo sequence datasets

(2018) Darryl R. Jones et al.   Biotechnology for Biofuels

Glycan-metabolizing enzymes in microbe-host interactions: the Streptococcus pneumoniae paradigm

(2018) Joanne K. Hobbs et al.   FEBS LETTERS

Metagenomics reveals functional synergy and novel polysaccharide utilization loci in the Castor canadensis fecal microbiome

(2018) Zachary Armstrong et al.   ISME Journal

InterPro in 2019: improving coverage, classification and access to protein sequence annotations

(2018) Alex L Mitchell et al.   NUCLEIC ACIDS RESEARCH

PULDB: the expanded database of Polysaccharide Utilization Loci

(2017) Nicolas Terrapon et al.   NUCLEIC ACIDS RESEARCH

Diverse modes of galacto-specific carbohydrate recognition by a family 31 glycoside hydrolase from Clostridium perfringens

(2017) Julie M. Grondin et al.   PLoS One

Recognition of protein-linked glycans as a determinant of peptidase activity

(2017) Ilit Noach et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Advances in Enzymatic Glycoside Synthesis

(2016) Phillip M. Danby et al.   ACS Chemical Biology

CDD/SPARCLE: functional classification of proteins via subfamily domain architectures

(2016) Aron Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees

(2016) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Structural and biochemical characterization of novel bacterial α-galactosidases belonging to glycoside hydrolase family 31

(2015) Takatsugu Miyazaki et al.   BIOCHEMICAL JOURNAL

Symbol Nomenclature for Graphical Representations of Glycans

(2015) Ajit Varki et al.   GLYCOBIOLOGY

Sph3 Is a Glycoside Hydrolase Required for the Biosynthesis of Galactosaminogalactan inAspergillus fumigatus

(2015) Natalie C. Bamford et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The O-Linked Glycome and Blood Group Antigens ABO on Mucin-Type Glycoproteins in Mucinous and Serous Epithelial Ovarian Tumors

(2015) Varvara Vitiazeva et al.   PLoS One

Symbiotic Human Gut Bacteria with Variable Metabolic Priorities for Host Mucosal Glycans

(2015) N. A. Pudlo et al.   mBio

Mucin glycan foraging in the human gut microbiome

(2015) Louise E. Tailford et al.   Frontiers in Genetics

Site-specific analysis of the O-glycosylation of bovine fetuin by electron-transfer dissociation mass spectrometry

(2014) Markus Windwarder et al.   Journal of Proteomics

Unusual Enzymatic Glycoside Cleavage Mechanisms

(2013) Seino A. K. Jongkees et al.   ACCOUNTS OF CHEMICAL RESEARCH

A refined palate: Bacterial consumption of host glycans in the gut

(2013) A. Marcobal et al.   GLYCOBIOLOGY

Biomining active cellulases from a mining bioremediation system

(2013) Keith Mewis et al.   JOURNAL OF BIOTECHNOLOGY

The carbohydrate-active enzymes database (CAZy) in 2013

(2013) Vincent Lombard et al.   NUCLEIC ACIDS RESEARCH

Functional Environmental Screening of a Metagenomic Library Identifies stlA; A Unique Salt Tolerance Locus from the Human Gut Microbiome

(2013) Eamonn P. Culligan et al.   PLoS One

Almost all human gastric mucin O-glycans harbor blood group A, B or H antigens and are potential binding sites for Helicobacter pylori

(2012) Yannick Rossez et al.   GLYCOBIOLOGY

dbCAN: a web resource for automated carbohydrate-active enzyme annotation

(2012) Yanbin Yin et al.   NUCLEIC ACIDS RESEARCH

A Format for Phylogenetic Placements

(2012) Frederick A. Matsen et al.   PLoS One

Structural and enzymatic characterization of a glycoside hydrolase family 31 α-xylosidase fromCellvibrio japonicusinvolved in xyloglucan saccharification

(2011) Johan Larsbrink et al.   BIOCHEMICAL JOURNAL

Identification and characterization of novel cellulolytic and hemicellulolytic genes and enzymes derived from German grassland soil metagenomes

(2011) Heiko Nacke et al.   BIOTECHNOLOGY LETTERS

α-N-Acetylgalactosaminidase from Infant-associated Bifidobacteria Belonging to Novel Glycoside Hydrolase Family 129 Is Implicated in Alternative Mucin Degradation Pathway

(2011) Masashi Kiyohara et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

(2011) F. Sievers et al.   Molecular Systems Biology

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Functional metagenomics to mine the human gut microbiome for dietary fiber catabolic enzymes

(2010) L. Tasse et al.   GENOME RESEARCH

Biosynthetic Origin of the Galactosamine Substituent of Arabinogalactan inMycobacterium tuberculosis

(2010) Henrieta Škovierová et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Adaptation to herbivory by the Tammar wallaby includes bacterial and glycoside hydrolase profiles different from other herbivores

(2010) P. B. Pope et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

(2009) S. Capella-Gutierrez et al.   BIOINFORMATICS

DOG 1.0: illustrator of protein domain structures

(2009) Jian Ren et al.   CELL RESEARCH

The NIH Human Microbiome Project

(2009) et al.   GENOME RESEARCH

The 1.9 Å Structure of Human α-N-Acetylgalactosaminidase: The Molecular Basis of Schindler and Kanzaki Diseases

(2009) Nathaniel E. Clark et al.   JOURNAL OF MOLECULAR BIOLOGY

Mucosal Glycan Foraging Enhances Fitness and Transmission of a Saccharolytic Human Gut Bacterial Symbiont

(2008) Eric C. Martens et al.   Cell Host & Microbe

A One Pot, One Step, Precision Cloning Method with High Throughput Capability

(2008) Carola Engler et al.   PLoS One

A Rapid Bootstrap Algorithm for the RAxML Web Servers

(2008) Alexandros Stamatakis et al.   SYSTEMATIC BIOLOGY

Combining the polymerase incomplete primer extension method for cloning and mutagenesis with microscreening to accelerate structural genomics efforts

(2007) Heath E. Klock et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS