4.7 Article

Transcriptome analysis of Procambarus clarkii infected with infectious hypodermal and haematopoietic necrosis virus

期刊

FISH & SHELLFISH IMMUNOLOGY
卷 98, 期 -, 页码 766-772

出版社

ACADEMIC PRESS LTD- ELSEVIER SCIENCE LTD
DOI: 10.1016/j.fsi.2019.11.027

关键词

Infectious hypodermal and haematopoietic necrosis virus (IHHNV); Procambarus clarkii; Transcriptome

资金

  1. Natural Science Foundation of Shandong Province [ZR2019MD020, ZR2016CM10]

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Infectious hypodermal and haematopoietic necrosis virus (IHHNV) is a major viral pathogen in cultured penaeid shrimp. IHHNV has many hosts, mainly including crustaceans. It has recently been reported that Procambarus clarkii can be infected by IHHNV. In the present study, we studied the hepatopancreas of P. clarkii by transcriptome high-throughput sequencing to analyze the response of P. clarkii to IHHNV infection. After de novo assembly, there were 400,340,760 clean reads. A total of 237 differentially expressed genes (DEGs) were obtained, including 77 significantly up-regulated unigenes and 160 significantly down-regulated ones. The expression levels of 12 immune-related DEGs were validated by qRT-PCR, substantiating the reliability of RNA-Seq results. The enrichment analysis of DEGs showed that the immune-related pathways were closely related to apoptosis and phagocytosis. Moreover, a large number of pathways related to metabolic function were down-regulated, suggesting that IHHNV infection might affect the growth of P. clarkii.

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