Landscape genomics predicts climate change‐related genetic offset for the widespread Platycladus orientalis (Cupressaceae)

Ecological genomics predicts climate vulnerability in an endangered southwestern songbird

(2018) Kristen Ruegg et al.   ECOLOGY LETTERS

Inferring Continuous and Discrete Population Genetic Structure Across Space

(2018) Gideon S. Bradburd et al.   GENETICS

Genomic signals of selection predict climate-driven population declines in a migratory bird

(2018) Rachael A. Bay et al.   SCIENCE

RADseq approaches and applications for forest tree genetics

(2018) Thomas L. Parchman et al.   Tree Genetics & Genomes

Inferring Continuous and Discrete Population Genetic Structure Across Space

(2018) Gideon S. Bradburd et al.   GENETICS

Combining mitochondrial and nuclear genome analyses to dissect the effects of colonization, environment, and geography on population structure in Pinus tabuliformis

(2018) Hanhan Xia et al.   Evolutionary Applications

Defense responses of Thuja orientalis to infestation of anholocyclic species aphid Cinara tujafilina

(2018) Roma Durak et al.   JOURNAL OF PLANT PHYSIOLOGY

Advances in ecological genomics in forest trees and applications to genetic resources conservation and breeding

(2017) Jason A. Holliday et al.   MOLECULAR ECOLOGY

RADseq provides unprecedented insights into molecular ecology and evolutionary genetics: comment on Breaking RAD by Lowry et al . (2016)

(2017) Garrett J. McKinney et al.   Molecular Ecology Resources

Deriving genotypes from RAD-seq short-read data using Stacks

(2017) Nicolas C Rochette et al.   Nature Protocols

pcadapt: anRpackage to perform genome scans for selection based on principal component analysis

(2016) Keurcien Luu et al.   Molecular Ecology Resources

Bioinformatic processing of RAD-seq data dramatically impacts downstream population genetic inference

(2016) Aaron B. A. Shafer et al.   Methods in Ecology and Evolution

Climate-Related Local Extinctions Are Already Widespread among Plant and Animal Species

(2016) John J. Wiens   PLOS BIOLOGY

Mapping the climatic suitable habitat of oriental arborvitae (Platycladus orientalis) for introduction and cultivation at a global scale

(2016) Guoqing Li et al.   Scientific Reports

Time to get moving: assisted gene flow of forest trees

(2015) Sally N. Aitken et al.   Evolutionary Applications

Clumpak : a program for identifying clustering modes and packaging population structure inferences across K

(2015) Naama M. Kopelman et al.   Molecular Ecology Resources

Predicting Impacts of Future Climate Change on the Distribution of the Widespread Conifer Platycladus orientalis

(2015) Xian-Ge Hu et al.   PLoS One

Accelerating extinction risk from climate change

(2015) M. C. Urban   SCIENCE

Assessing species vulnerability to climate change

(2015) Michela Pacifici et al.   Nature Climate Change

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Ecological genomics meets community-level modelling of biodiversity: mapping the genomic landscape of current and future environmental adaptation

(2014) Matthew C. Fitzpatrick et al.   ECOLOGY LETTERS

Isolation by environment

(2014) Ian J. Wang et al.   MOLECULAR ECOLOGY

Evaluation of demographic history and neutral parameterization on the performance ofFSToutlier tests

(2014) Katie E. Lotterhos et al.   MOLECULAR ECOLOGY

Restriction site-associated DNA sequencing, genotyping error estimation andde novoassembly optimization for population genetic inference

(2014) A. Mastretta-Yanes et al.   Molecular Ecology Resources

Optimization of the genotyping-by-sequencing strategy for population genomic analysis in conifers

(2014) Jin Pan et al.   Molecular Ecology Resources

Assisted Gene Flow to Facilitate Local Adaptation to Climate Change

(2013) Sally N. Aitken et al.   Annual Review of Ecology Evolution and Systematics

Robust Identification of Local Adaptation from Allele Frequencies

(2013) T. Gunther et al.   GENETICS

Mining conifers’ mega-genome using rapid and efficient multiplexed high-throughput genotyping-by-sequencing (GBS) SNP discovery platform

(2013) Charles Chen et al.   Tree Genetics & Genomes

Putting the landscape into the genomics of trees: approaches for understanding local adaptation and population responses to changing climate

(2013) V. L. Sork et al.   Tree Genetics & Genomes

Quantifying the benefit of early climate change mitigation in avoiding biodiversity loss

(2013) R. Warren et al.   Nature Climate Change

The geographical and environmental determinants of genetic diversity for four alpine conifers of the European Alps

(2012) E. Mosca et al.   MOLECULAR ECOLOGY

Distinct Niche Divergence Characterizes the Homoploid Hybrid Speciation of Pinus densata on the Tibetan Plateau

(2011) Jian-Feng Mao et al.   AMERICAN NATURALIST

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Enhancements to the ADMIXTURE algorithm for individual ancestry estimation

(2011) David H Alexander et al.   BMC BIOINFORMATICS

Gradient forests: calculating importance gradients on physical predictors

(2011) Nick Ellis et al.   ECOLOGY

Recombination rate variation and speciation: theoretical predictions and empirical results from rabbits and mice

(2011) M. W. Nachman et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

A Map of Local Adaptation in Arabidopsis thaliana

(2011) A. Fournier-Level et al.   SCIENCE

Beyond Predictions: Biodiversity Conservation in a Changing Climate

(2011) T. P. Dawson et al.   SCIENCE

Stacks : Building and Genotyping Loci De Novo From Short-Read Sequences

(2011) Julian M. Catchen et al.   G3-Genes Genomes Genetics

A Quantitative Survey of Local Adaptation and Fitness Trade‐Offs

(2009) Joe Hereford   AMERICAN NATURALIST

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

adegenet: a R package for the multivariate analysis of genetic markers

(2008) Thibaut Jombart   BIOINFORMATICS

Adaptation, migration or extirpation: climate change outcomes for tree populations

(2008) Sally N. Aitken et al.   Evolutionary Applications