Ancestral protein reconstruction: techniques and applications

Joint amalgamation of most parsimonious reconciled gene trees

(2014) Celine Scornavacca et al.   BIOINFORMATICS

The Inference of Gene Trees with Species Trees

(2014) Gergely J. Szöllősi et al.   SYSTEMATIC BIOLOGY

Lateral Gene Transfer from the Dead

(2013) Gergely J. Szöllősi et al.   SYSTEMATIC BIOLOGY

Reconstruction of Ancestral Metabolic Enzymes Reveals Molecular Mechanisms Underlying Evolutionary Innovation through Gene Duplication

(2012) Karin Voordeckers et al.   PLOS BIOLOGY

REGEN: Ancestral Genome Reconstruction for Bacteria

(2012) Kuan Yang et al.   Genes

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Reconstructing ancestral gene content by coevolution

(2009) T. Tuller et al.   GENOME RESEARCH