Transcriptomic analysis of Macrobrachium rosenbergii (giant fresh water prawn) post-larvae in response to M. rosenbergii nodavirus (MrNV) infection: de novo assembly and functional annotation
出版年份 2019 全文链接
标题
Transcriptomic analysis of Macrobrachium rosenbergii (giant fresh water prawn) post-larvae in response to M. rosenbergii nodavirus (MrNV) infection: de novo assembly and functional annotation
作者
关键词
-
出版物
BMC GENOMICS
Volume 20, Issue 1, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2019-10-23
DOI
10.1186/s12864-019-6102-6
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Transcriptome analysis of ‘Huanghai No. 2’ Fenneropenaeus chinensis response to WSSV using RNA-seq
- (2018) Xiaoli Shi et al. FISH & SHELLFISH IMMUNOLOGY
- Transcriptome analysis of Macrobrachium rosenbergii intestines under the white spot syndrome virus and poly (I:C) challenges
- (2018) Zhengfeng Ding et al. PLoS One
- De novo assembly, characterization, functional annotation and expression patterns of the black tiger shrimp (Penaeus monodon) transcriptome
- (2018) Roger Huerlimann et al. Scientific Reports
- Molecular isolation and characterization of a spätzle gene from Macrobrachium rosenbergii
- (2018) Akapon Vaniksampanna et al. FISH & SHELLFISH IMMUNOLOGY
- UniProt: a worldwide hub of protein knowledge
- (2018) NUCLEIC ACIDS RESEARCH
- Hematopoietic tissue of Macrobrachium rosenbergii plays dual roles as a source of hemocyte hematopoiesis and as a defensive mechanism against Macrobrachium rosenbergii nodavirus infection
- (2018) Pitchanee Jariyapong et al. FISH & SHELLFISH IMMUNOLOGY
- Gill transcriptomes reveal involvement of cytoskeleton remodeling and immune defense in ammonia stress response in the banana shrimp Fenneropenaeus merguiensis
- (2017) Wei Wang et al. FISH & SHELLFISH IMMUNOLOGY
- Transcriptome profiling of the Macrobrachium rosenbergii lymphoid organ under the white spot syndrome virus challenge
- (2017) Jun Cao et al. FISH & SHELLFISH IMMUNOLOGY
- Short versus long double-stranded RNA activation of a post-transcriptional gene knockdown pathway
- (2017) Nir Shpak et al. RNA Biology
- A Tissue-Mapped Axolotl De Novo Transcriptome Enables Identification of Limb Regeneration Factors
- (2017) Donald M. Bryant et al. Cell Reports
- De novo assembly and transcriptome characterization of major growth-related genes in various tissues of Penaeus monodon
- (2016) Cuong Nguyen et al. AQUACULTURE
- MultiQC: summarize analysis results for multiple tools and samples in a single report
- (2016) Philip Ewels et al. BIOINFORMATICS
- Differentially expressed transcripts in stomach of Penaeus monodon in response to AHPND infection
- (2016) Wipasiri Soonthornchai et al. DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY
- Toll receptor response to white spot syndrome virus challenge in giant freshwater prawns ( Macrobrachium rosenbergii )
- (2016) Jinling Feng et al. FISH & SHELLFISH IMMUNOLOGY
- A transcriptome study on Macrobrachium rosenbergii hepatopancreas experimentally challenged with white spot syndrome virus (WSSV)
- (2016) Rama Rao et al. JOURNAL OF INVERTEBRATE PATHOLOGY
- A comparison of physiological and transcriptome responses to water deprivation and salt loading in the rat supraoptic nucleus
- (2015) Michael P. Greenwood et al. AMERICAN JOURNAL OF PHYSIOLOGY-REGULATORY INTEGRATIVE AND COMPARATIVE PHYSIOLOGY
- BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
- (2015) Felipe A. Simão et al. BIOINFORMATICS
- Characterization of two novel ADP ribosylation factors from giant freshwater prawn Macrobrachium rosenbergii and their responses to WSSV challenge
- (2015) Zheng-Feng Ding et al. DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY
- Function of a novel C-type lectin with two CRD domains from Macrobrachium rosenbergii in innate immunity
- (2015) Xin Huang et al. DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY
- Involvement of Relish gene from Macrobrachium rosenbergii in the expression of anti-microbial peptides
- (2015) Yan-Ru Shi et al. DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY
- Interaction study of a novel Macrobrachium rosenbergii effector caspase with B2 and capsid proteins of M. rosenbergii nodavirus reveals their roles in apoptosis
- (2015) Supak Youngcharoen et al. FISH & SHELLFISH IMMUNOLOGY
- Macrobrachium rosenbergii mannose binding lectin: Synthesis of MrMBL-N20 and MrMBL-C16 peptides and their antimicrobial characterization, bioinformatics and relative gene expression analysis
- (2015) Jesu Arockiaraj et al. FISH & SHELLFISH IMMUNOLOGY
- Identification and function of 11 Rab GTPases in giant freshwater prawn Macrobrachium rosenbergii
- (2015) Ying Huang et al. FISH & SHELLFISH IMMUNOLOGY
- Transcriptome Profiles of Penaeus (Marsupenaeus) japonicus Animal and Vegetal Half-Embryos: Identification of Sex Determination, Germ Line, Mesoderm, and Other Developmental Genes
- (2015) Melony J. Sellars et al. MARINE BIOTECHNOLOGY
- De-novo transcriptome analysis of the banana shrimp (Fenneropenaeus merguiensis) and identification of genes associated with reproduction and development
- (2015) Daniel Powell et al. Marine Genomics
- RNA-seq analysis of Macrobrachium rosenbergii hepatopancreas in response to Vibrio parahaemolyticus infection
- (2015) Rama Rao et al. Gut Pathogens
- Transcriptome and Molecular Pathway Analysis of the Hepatopancreas in the Pacific White Shrimp Litopenaeus vannamei under Chronic Low-Salinity Stress
- (2015) Ke Chen et al. PLoS One
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- Cloning and characterization of two different ficolins from the giant freshwater prawn Macrobrachium rosenbergii
- (2014) Xiao-Wen Zhang et al. DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY
- Molecular cloning and characterization of a Toll receptor gene from Macrobrachium rosenbergii
- (2014) Chutima Srisuk et al. FISH & SHELLFISH IMMUNOLOGY
- A cytosolic glutathione s-transferase, GST-theta from freshwater prawn Macrobrachium rosenbergii: molecular and biochemical properties
- (2014) Jesu Arockiaraj et al. GENE
- SNP Discovery in the Transcriptome of White Pacific Shrimp Litopenaeus vannamei by Next Generation Sequencing
- (2014) Yang Yu et al. PLoS One
- Novel transcriptome assembly and improved annotation of the whiteleg shrimp (Litopenaeus vannamei), a dominant crustacean in global seafood mariculture
- (2014) Noushin Ghaffari et al. Scientific Reports
- Quantitative assessment of single-cell RNA-sequencing methods
- (2013) Angela R Wu et al. NATURE METHODS
- De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
- (2013) Brian J Haas et al. Nature Protocols
- Transcriptome Analysis on Chinese Shrimp Fenneropenaeus chinensis during WSSV Acute Infection
- (2013) Shihao Li et al. PLoS One
- Analysis of Expression, Cellular Localization, and Function of Three Inhibitors of Apoptosis (IAPs) from Litopenaeus vannamei during WSSV Infection and in Regulation of Antimicrobial Peptide Genes (AMPs)
- (2013) Pei-Hui Wang et al. PLoS One
- Infections of MrNV (Macrobrachium rosenbergii nodavirus) in cultivated whiteleg shrimp Penaeus vannamei in Asia
- (2012) Saengchan Senapin et al. AQUACULTURE
- Snakemake--a scalable bioinformatics workflow engine
- (2012) J. Koster et al. BIOINFORMATICS
- Host defense against DNA virus infection in shrimp is mediated by the siRNA pathway
- (2012) Tianzhi Huang et al. EUROPEAN JOURNAL OF IMMUNOLOGY
- Immunological role of thiol-dependent peroxiredoxin gene in Macrobrachium rosenbergii
- (2012) Jesu Arockiaraj et al. FISH & SHELLFISH IMMUNOLOGY
- Transglutaminase regulates immune-related genes in shrimp
- (2012) Fernand F. Fagutao et al. FISH & SHELLFISH IMMUNOLOGY
- Three different anti-lipopolysaccharide factors identified from giant freshwater prawn, Macrobrachium rosenbergii
- (2012) Qian Ren et al. FISH & SHELLFISH IMMUNOLOGY
- Crustin, a WAP domain containing antimicrobial peptide from freshwater prawn Macrobrachium rosenbergii: Immune characterization
- (2012) Jesu Arockiaraj et al. FISH & SHELLFISH IMMUNOLOGY
- Pattern recognition receptors acting in innate immune system of shrimp against pathogen infections
- (2012) Xian-Wei Wang et al. FISH & SHELLFISH IMMUNOLOGY
- Molecular mechanisms of the shrimp clotting system
- (2012) Mary Beth B. Maningas et al. FISH & SHELLFISH IMMUNOLOGY
- Functional Analysis of a Crustacean MicroRNA in Host-Virus Interactions
- (2012) T. Huang et al. JOURNAL OF VIROLOGY
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Signature miRNAs Involved in the Innate Immunity of Invertebrates
- (2012) Geng Yang et al. PLoS One
- Immunomodulatory effect of recombinant RNA-dependent RNA polymerase protein of Macrobrachium rosenbergii nodavirus in giant freshwater prawn M. rosenbergii
- (2011) Pramoda Kumar Sahoo et al. AQUACULTURE RESEARCH
- RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
- (2011) Bo Li et al. BMC BIOINFORMATICS
- Identification and functional characterization of Dicer2 and five single VWC domain proteins of Litopenaeus vannamei
- (2011) Yi-Hong Chen et al. DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY
- Molecular cloning, characterization and expression analysis of two novel Tolls (LvToll2 and LvToll3) and three putative Spätzle-like Toll ligands (LvSpz1–3) from Litopenaeus vannamei
- (2011) Pei-Hui Wang et al. DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY
- Bioinformatic characterization and gene expression pattern of apoptosis inhibitor from Macrobrachium rosenbergii challenged with infectious hypodermal and hematopoietic necrosis virus
- (2011) Jesu Arockiaraj et al. FISH & SHELLFISH IMMUNOLOGY
- Effect of infectious hypodermal and haematopoietic necrosis virus (IHHNV) infection on caspase 3c expression and activity in freshwater prawn Macrobrachium rosenbergii
- (2011) Jesu Arockiaraj et al. FISH & SHELLFISH IMMUNOLOGY
- Full-length transcriptome assembly from RNA-Seq data without a reference genome
- (2011) Manfred G Grabherr et al. NATURE BIOTECHNOLOGY
- Non-specific activation of antiviral immunity and induction of RNA interference may engage the same pathway in the Pacific white leg shrimp Litopenaeus vannamei
- (2010) Yannick Labreuche et al. DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY
- Characterization of two novel ADP ribosylation factors from the shrimp Marsupenaeus japonicus
- (2010) Jinyou Ma et al. FISH & SHELLFISH IMMUNOLOGY
- A Dicer-1 gene from white shrimp Litopenaeus vannamei: Expression pattern in the processes of immune response and larval development
- (2010) Xuemei Yao et al. FISH & SHELLFISH IMMUNOLOGY
- Alternative expression analysis by RNA sequencing
- (2010) Malachi Griffith et al. NATURE METHODS
- A scaling normalization method for differential expression analysis of RNA-seq data
- (2010) Mark D Robinson et al. GENOME BIOLOGY
- Mechanisms of apoptosis in Crustacea: what conditions induce versus suppress cell death?
- (2009) Michael A. Menze et al. APOPTOSIS
- edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
- (2009) M. D. Robinson et al. BIOINFORMATICS
- 3' tag digital gene expression profiling of human brain and universal reference RNA using Illumina Genome Analyzer
- (2009) Yan W Asmann et al. BMC GENOMICS
- Macrobrachium rosenbergii nodavirus disease (white tail disease) in Australia
- (2009) L Owens et al. DISEASES OF AQUATIC ORGANISMS
- Identification and molecular characterization of a Spätzle-like protein from Chinese shrimp (Fenneropenaeus chinensis)
- (2009) Xiu-Zhen Shi et al. FISH & SHELLFISH IMMUNOLOGY
- Identification and cloning of a selenium dependent glutathione peroxidase from giant freshwater prawn, Macrobrachium rosenbergii
- (2009) Shinn-Pyng Yeh et al. FISH & SHELLFISH IMMUNOLOGY
- Molecular cloning and characterization of a class II ADP ribosylation factor from the shrimp Marsupenaeus japonicus
- (2009) Mingchang Zhang et al. FISH & SHELLFISH IMMUNOLOGY
- Ran GTPase Regulates Hemocytic Phagocytosis of Shrimp by Interaction with Myosin
- (2009) Weifeng Liu et al. JOURNAL OF PROTEOME RESEARCH
- Validation of reference genes for quantitative measurement of immune gene expression in shrimp
- (2009) Arun K. Dhar et al. MOLECULAR IMMUNOLOGY
- Applications of next-generation sequencing technologies in functional genomics
- (2008) Olena Morozova et al. GENOMICS
- Regulation of actin cytoskeleton dynamics by Arf-family GTPases
- (2008) Kenneth R. Myers et al. TRENDS IN CELL BIOLOGY
- A key gene of the RNA interference pathway in the black tiger shrimp, Penaeus monodon: Identification and functional characterisation of Dicer-1
- (2007) Jianguo Su et al. FISH & SHELLFISH IMMUNOLOGY
- Antiviral Phagocytosis Is Regulated by a Novel Rab-Dependent Complex in ShrimpPenaeus japonicus
- (2007) Wenlin Wu et al. JOURNAL OF PROTEOME RESEARCH
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