期刊
BIOINFORMATICS
卷 32, 期 18, 页码 2861-2862出版社
OXFORD UNIV PRESS
DOI: 10.1093/bioinformatics/btw356
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资金
- Sao Paulo Research Foundation (FAPESP) [2014/01095-8]
- National Council for Scientific and Technological Development (CNPq) [407502/2013-0]
The GHap R package was designed to call haplotypes from phased marker data. Given user-defined haplotype blocks (HapBlock), the package identifies the different haplotype alleles (HapAllele) present in the data and scores sample haplotype allele genotypes (HapGenotype) based on HapAllele dose (i.e. 0, 1 or 2 copies). The output is not only useful for analyses that can handle multi-allelic markers, but is also conveniently formatted for existing pipelines intended for bi-allelic markers.
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