ACTG: novel peptide mapping onto gene models

PGx: Putting Peptides to BED

(2015) Manor Askenazi et al.   JOURNAL OF PROTEOME RESEARCH

TransVar: a multilevel variant annotator for precision genomics

(2015) Wanding Zhou et al.   NATURE METHODS

A draft map of the human proteome

(2014) Min-Sik Kim et al.   NATURE

Compact variant-rich customized sequence database and a fast and sensitive database search for efficient proteogenomic analyses

(2014) Heejin Park et al.   PROTEOMICS

Proteogenomic Database Construction Driven from Large Scale RNA-seq Data

(2013) Sunghee Woo et al.   JOURNAL OF PROTEOME RESEARCH

Discovery and Mass Spectrometric Analysis of Novel Splice-junction Peptides Using RNA-Seq

(2013) Gloria M. Sheynkman et al.   MOLECULAR & CELLULAR PROTEOMICS

Pinstripe: a suite of programs for integrating transcriptomic and proteomic datasets identifies novel proteins and improves differentiation of protein-coding and non-coding genes

(2012) Dennis K. Gascoigne et al.   BIOINFORMATICS