densityCut: an efficient and versatile topological approach for automatic clustering of biological data

Identification of cell types from single-cell transcriptomes using a novel clustering method

(2015) Chen Xu et al.   BIOINFORMATICS

Data-Driven Phenotypic Dissection of AML Reveals Progenitor-like Cells that Correlate with Prognosis

(2015) Jacob H. Levine et al.   CELL

Single-Cell Transcriptomics Reveals a Population of Dormant Neural Stem Cells that Become Activated upon Brain Injury

(2015) Enric Llorens-Bobadilla et al.   Cell Stem Cell

Comparing the performance of biomedical clustering methods

(2015) Christian Wiwie et al.   NATURE METHODS

Optimizing Cancer Genome Sequencing and Analysis

(2015) Malachi Griffith et al.   Cell Systems

Clonal evolution revealed by whole genome sequencing in a case of primary myelofibrosis transformed to secondary acute myeloid leukemia

(2014) E K Engle et al.   LEUKEMIA

Low-coverage single-cell mRNA sequencing reveals cellular heterogeneity and activated signaling pathways in developing cerebral cortex

(2014) Alex A Pollen et al.   NATURE BIOTECHNOLOGY

PyClone: statistical inference of clonal population structure in cancer

(2014) Andrew Roth et al.   NATURE METHODS

Clonal Architectures and Driver Mutations in Metastatic Melanomas

(2014) Li Ding et al.   PLoS One

Clustering by fast search and find of density peaks

(2014) A. Rodriguez et al.   SCIENCE

SciClone: Inferring Clonal Architecture and Tracking the Spatial and Temporal Patterns of Tumor Evolution

(2014) Christopher A. Miller et al.   PLoS Computational Biology

An advancement in clustering via nonparametric density estimation

(2013) Giovanna Menardi et al.   STATISTICS AND COMPUTING

Clonal evolution in relapsed acute myeloid leukaemia revealed by whole-genome sequencing

(2012) Li Ding et al.   NATURE

Mixtures of common t-factor analyzers for clustering high-dimensional microarray data

(2011) Jangsun Baek et al.   BIOINFORMATICS

Single-Cell Mass Cytometry of Differential Immune and Drug Responses Across a Human Hematopoietic Continuum

(2011) S. C. Bendall et al.   SCIENCE

Density-based clustering

(2011) Hans-Peter Kriegel et al.   Wiley Interdisciplinary Reviews-Data Mining and Knowledge Discovery

A Generalized Single Linkage Method for Estimating the Cluster Tree of a Density

(2009) Werner Stuetzle et al.   JOURNAL OF COMPUTATIONAL AND GRAPHICAL STATISTICS

Allowing for mandatory covariates in boosting estimation of sparse high-dimensional survival models

(2008) Harald Binder et al.   BMC BIOINFORMATICS