Molecular mechanisms of autophagy in plants: Role of ATG8 proteins in formation and functioning of autophagosomes

Dynamics and function of PtdIns(3)Pin autophagy

(2014) Keisuke Obara et al.   Autophagy

Chloroplasts are partially mobilized to the vacuole by autophagy

(2014) Hiroyuki Ishida et al.   Autophagy

Arabidopsis ATG6 is required to limit the pathogen-associated cell death response

(2014) Shalaka Patel et al.   Autophagy

ArabidopsisATG4 cysteine proteases specificity toward ATG8 substrates

(2014) Eunsook Park et al.   Autophagy

Folding into an autophagosome

(2014) Romain Le Bars et al.   Autophagy

ArabidopsisATG11, a scaffold that links the ATG1-ATG13 kinase complex to general autophagy and selective mitophagy

(2014) Faqiang Li et al.   Autophagy

Autophagic proteins ATG4 and ATG8 in wheat: Structural characteristics and their role under stress conditions

(2014) V. V. Ryabovol et al.   Doklady Biochemistry and Biophysics

Degradation of Organelles or Specific Organelle Components via Selective Autophagy in Plant Cells

(2014) Simon Michaeli et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Organ-specific quality control of plant peroxisomes is mediated by autophagy

(2014) K. Yoshimoto et al.   JOURNAL OF CELL SCIENCE

A Revised Assay for Monitoring Autophagic Flux in Arabidopsis thaliana Reveals Involvement of AUTOPHAGY-RELATED9 in Autophagy

(2014) Kwang Deok Shin et al.   MOLECULES AND CELLS

AUTOPHAGY-RELATED11 Plays a Critical Role in General Autophagy- and Senescence-Induced Mitophagy in Arabidopsis

(2014) F. Li et al.   PLANT CELL

Identification of autophagy-related genes ATG4 and ATG8 from wheat (Triticum aestivum L.) and profiling of their expression patterns responding to biotic and abiotic stresses

(2014) Dan Pei et al.   PLANT CELL REPORTS

Plant peroxisomes are degraded by starvation-induced and constitutive autophagy in tobacco BY-2 suspension-cultured cells

(2014) Olga V. Voitsekhovskaja et al.   Frontiers in Plant Science

Ultrastructure of autophagy in plant cells

(2013) Wouter G van Doorn et al.   Autophagy

The machinery of macroautophagy

(2013) Yuchen Feng et al.   CELL RESEARCH

Pollination induces autophagy in petunia petals via ethylene

(2013) Kenichi Shibuya et al.   JOURNAL OF EXPERIMENTAL BOTANY

Differential processing of Arabidopsis ubiquitin-like Atg8 autophagy proteins by Atg4 cysteine proteases

(2013) J. Woo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

NBR1-Mediated Selective Autophagy Targets Insoluble Ubiquitinated Protein Aggregates in Plant Stress Responses

(2013) Jie Zhou et al.   PLoS Genetics

Dual roles of Atg8−PE deconjugation by Atg4 in autophagy

(2012) Zhong-Qiu Yu et al.   Autophagy

MAPK15/ERK8 stimulates autophagy by interacting with LC3 and GABARAP proteins

(2012) David Colecchia et al.   Autophagy

Binding of the Atg1/ULK1 kinase to the ubiquitin-like protein Atg8 regulates autophagy

(2012) Claudine Kraft et al.   EMBO JOURNAL

Pex3-anchored Atg36 tags peroxisomes for degradation inSaccharomyces cerevisiae

(2012) Alison M Motley et al.   EMBO JOURNAL

The Autophagy-related Protein Kinase Atg1 Interacts with the Ubiquitin-like Protein Atg8 via the Atg8 Family Interacting Motif to Facilitate Autophagosome Formation

(2012) Hitoshi Nakatogawa et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Rab GTPase-Activating Proteins in Autophagy: Regulation of Endocytic and Autophagy Pathways by Direct Binding to Human ATG8 Modifiers

(2012) D. Popovic et al.   MOLECULAR AND CELLULAR BIOLOGY

A New Type of Compartment, Defined by Plant-Specific Atg8-Interacting Proteins, Is Induced upon Exposure of Arabidopsis Plants to Carbon Starvation

(2012) A. Honig et al.   PLANT CELL

The Expanding Universe of Ubiquitin and Ubiquitin-Like Modifiers

(2012) R. D. Vierstra   PLANT PHYSIOLOGY

Oxidative stress-induced autophagy in plants: The role of mitochondria

(2012) Farida Minibayeva et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Autophagy-related gene, TdAtg8, in wild emmer wheat plays a role in drought and osmotic stress response

(2012) Duygu Kuzuoglu-Ozturk et al.   PLANTA

Heterologous Expression of ATG8c from Soybean Confers Tolerance to Nitrogen Deficiency and Increases Yield in Arabidopsis

(2012) Tongmei Xia et al.   PLoS One

Autophagy: a multifaceted intracellular system for bulk and selective recycling

(2012) Faqiang Li et al.   TRENDS IN PLANT SCIENCE

The Role of Atg Proteins in Autophagosome Formation

(2011) Noboru Mizushima et al.   Annual Review of Cell and Developmental Biology

Identification and functional analysis of Joka2, a tobacco member of the family of selective autophagy cargo receptors

(2011) Katarzyna Zientara-Rytter et al.   Autophagy

Plant NBR1 is a selective autophagy substrate and a functional hybrid of the mammalian autophagic adapters NBR1 and p62/SQSTM1

(2011) Steingrim Svenning et al.   Autophagy

Genome-Wide Identification, Classification, and Expression Analysis of Autophagy-Associated Gene Homologues in Rice (Oryza sativa L.)

(2011) K. Xia et al.   DNA RESEARCH

TheArabidopsisMultistress Regulator TSPO Is a Heme Binding Membrane Protein and a Potential Scavenger of Porphyrins via an Autophagy-Dependent Degradation Mechanism

(2011) Celine Vanhee et al.   PLANT CELL

The ATG1/ATG13 Protein Kinase Complex Is Both a Regulator and a Target of Autophagic Recycling in Arabidopsis

(2011) A. Suttangkakul et al.   PLANT CELL

Variations on a theme: plant autophagy in comparison to yeast and mammals

(2011) Tamar Avin-Wittenberg et al.   PROTOPLASMA

Atg8: an autophagy-related ubiquitin-like protein family

(2011) Tomer Shpilka et al.   GENOME BIOLOGY

Autophagosome Formation and Molecular Mechanism of Autophagy

(2010) Isei Tanida   ANTIOXIDANTS & REDOX SIGNALING

Mitochondrial clearance by autophagy in developing erythrocytes: Clearly important, but just how much so?

(2010) Monika Mortensen et al.   CELL CYCLE

The Beclin 1 interactome

(2010) Congcong He et al.   CURRENT OPINION IN CELL BIOLOGY

LC3 and GATE-16/GABARAP subfamilies are both essential yet act differently in autophagosome biogenesis

(2010) Hilla Weidberg et al.   EMBO JOURNAL

Current knowledge of the pre-autophagosomal structure (PAS)

(2010) Kuninori Suzuki et al.   FEBS LETTERS

Where do they come from? Insights into autophagosome formation

(2010) Maho Hamasaki et al.   FEBS LETTERS

Atg8-family interacting motif crucial for selective autophagy

(2010) Nobuo N. Noda et al.   FEBS LETTERS

Kinetics Comparisons of Mammalian Atg4 Homologues Indicate Selective Preferences toward Diverse Atg8 Substrates

(2010) Min Li et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The NMR structure of the autophagy-related protein Atg8

(2010) Hiroyuki Kumeta et al.   JOURNAL OF BIOMOLECULAR NMR

FYCO1 is a Rab7 effector that binds to LC3 and PI3P to mediate microtubule plus end–directed vesicle transport

(2010) Serhiy Pankiv et al.   JOURNAL OF CELL BIOLOGY

Combinational Soluble N-Ethylmaleimide-sensitive Factor Attachment Protein Receptor Proteins VAMP8 and Vti1b Mediate Fusion of Antimicrobial and Canonical Autophagosomes with Lysosomes

(2010) Nobumichi Furuta et al.   MOLECULAR BIOLOGY OF THE CELL

Network organization of the human autophagy system

(2010) Christian Behrends et al.   NATURE

The Autophagic Degradation of Chloroplasts via Rubisco-Containing Bodies Is Specifically Linked to Leaf Carbon Status But Not Nitrogen Status in Arabidopsis

(2010) M. Izumi et al.   PLANT PHYSIOLOGY

TOR Is a Negative Regulator of Autophagy in Arabidopsis thaliana

(2010) Yimo Liu et al.   PLoS One

Modulation of Local PtdIns3P Levels by the PI Phosphatase MTMR3 Regulates Constitutive Autophagy

(2010) Naoko Taguchi-Atarashi et al.   TRAFFIC

Autophagy is required for tolerance of drought and salt stress in plants

(2009) Yimo Liu et al.   Autophagy

Function and regulation of macroautophagy in plants

(2009) Diane C. Bassham   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH

TI-VAMP/VAMP7 and VAMP3/cellubrevin: two v-SNARE proteins involved in specific steps of the autophagy/multivesicular body pathways

(2009) Claudio Marcelo Fader et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH

Turnover of organelles by autophagy in yeast

(2009) Jean-Claude Farré et al.   CURRENT OPINION IN CELL BIOLOGY

Atg32 Is a Mitochondrial Protein that Confers Selectivity during Mitophagy

(2009) Tomotake Kanki et al.   DEVELOPMENTAL CELL

Mitochondria-Anchored Receptor Atg32 Mediates Degradation of Mitochondria via Selective Autophagy

(2009) Koji Okamoto et al.   DEVELOPMENTAL CELL

Control of autophagy initiation by phosphoinositide 3-phosphatase jumpy

(2009) Isabelle Vergne et al.   EMBO JOURNAL

The structure of Atg4B–LC3 complex reveals the mechanism of LC3 processing and delipidation during autophagy

(2009) Kenji Satoo et al.   EMBO JOURNAL

Nix is a selective autophagy receptor for mitochondrial clearance

(2009) Ivana Novak et al.   EMBO REPORTS

Structure and potential function of γ-aminobutyrate type A receptor-associated protein

(2009) Jeannine Mohrlüder et al.   FEBS Journal

A Genomic Screen for Yeast Mutants Defective in Selective Mitochondria Autophagy

(2009) Tomotake Kanki et al.   MOLECULAR BIOLOGY OF THE CELL

A Role for Ubiquitin in Selective Autophagy

(2009) Vladimir Kirkin et al.   MOLECULAR CELL

Distinct regulation of autophagic activity by Atg14L and Rubicon associated with Beclin 1–phosphatidylinositol-3-kinase complex

(2009) Yun Zhong et al.   NATURE CELL BIOLOGY

Two Beclin 1-binding proteins, Atg14L and Rubicon, reciprocally regulate autophagy at different stages

(2009) Kohichi Matsunaga et al.   NATURE CELL BIOLOGY

Dynamics and diversity in autophagy mechanisms: lessons from yeast

(2009) Hitoshi Nakatogawa et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Deciphering Transcriptional and Metabolic Networks Associated with Lysine Metabolism during Arabidopsis Seed Development

(2009) R. Angelovici et al.   PLANT PHYSIOLOGY

Absence of autophagy results in reactive oxygen species-dependent amplification of RLR signaling

(2009) Michal Caspi Tal et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Autophagy and plant innate immunity: Defense through degradation

(2009) Andrew P. Hayward et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

The ATG12-Conjugating Enzyme ATG10 Is Essential for Autophagic Vesicle Formation in Arabidopsis thaliana

(2008) A. R. Phillips et al.   GENETICS

Mitophagy in Yeast Occurs through a Selective Mechanism

(2008) Tomotake Kanki et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Quantitative analysis of autophagy-related protein stoichiometry by fluorescence microscopy

(2008) Jiefei Geng et al.   JOURNAL OF CELL BIOLOGY

Parkin is recruited selectively to impaired mitochondria and promotes their autophagy

(2008) Derek Narendra et al.   JOURNAL OF CELL BIOLOGY

Intracellular energy depletion triggers programmed cell death during petal senescence in tulip

(2008) A. K. Azad et al.   JOURNAL OF EXPERIMENTAL BOTANY

An autophagy-associated Atg8 protein is involved in the responses of Arabidopsis seedlings to hormonal controls and abiotic stresses

(2008) Silvia Slavikova et al.   JOURNAL OF EXPERIMENTAL BOTANY

The Atg16L Complex Specifies the Site of LC3 Lipidation for Membrane Biogenesis in Autophagy

(2008) Naonobu Fujita et al.   MOLECULAR BIOLOGY OF THE CELL

Beclin 1 Forms Two Distinct Phosphatidylinositol 3-Kinase Complexes with Mammalian Atg14 and UVRAG

(2008) Eisuke Itakura et al.   MOLECULAR BIOLOGY OF THE CELL

The ATG Autophagic Conjugation System in Maize: ATG Transcripts and Abundance of the ATG8-Lipid Adduct Are Regulated by Development and Nutrient Availability

(2008) T. Chung et al.   PLANT PHYSIOLOGY

Autophagy Plays a Role in Chloroplast Degradation during Senescence in Individually Darkened Leaves

(2008) S. Wada et al.   PLANT PHYSIOLOGY