siRNA-Finder (si-Fi) Software for RNAi-Target Design and Off-Target Prediction

RNA Interference: A Natural Immune System of Plants to Counteract Biotic Stressors

(2019) Tayeb Muhammad et al.   Cells

Abscisic acid influences tillering by modulation of strigolactones in barley

(2018) Hongwen Wang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Chromatin accessibility is associated with CRISPR-Cas9 efficiency in the zebrafish (Danio rerio)

(2018) Meri I. E. Uusi-Mäkelä et al.   PLoS One

Genebank genomics highlights the diversity of a global barley collection

(2018) Sara G. Milner et al.   NATURE GENETICS

A chromosome conformation capture ordered sequence of the barley genome

(2017) Martin Mascher et al.   NATURE

Inhibition of Porcine Endogenous Retrovirus by Multi-Targeting Micro RNA Against Long Terminal Region

(2017) H.-C. Chung et al.   TRANSPLANTATION PROCEEDINGS

Host-induced silencing ofFusarium culmorumgenes protects wheat from infection

(2016) Wanxin Chen et al.   JOURNAL OF EXPERIMENTAL BOTANY

Argonaute: The executor of small RNA function

(2016) Azali Azlan et al.   Journal of Genetics and Genomics

Mildew-Omics: How Global Analyses Aid the Understanding of Life and Evolution of Powdery Mildews

(2016) Laurence V. Bindschedler et al.   Frontiers in Plant Science

Monocot and dicot MLO powdery mildew susceptibility factors are functionally conserved in spite of the evolution of class-specific molecular features

(2015) Michela Appiano et al.   BMC PLANT BIOLOGY

Virus induced gene silencing (VIGS) for functional analysis of wheat genes involved in Zymoseptoria tritici susceptibility and resistance

(2015) Wing-Sham Lee et al.   FUNGAL GENETICS AND BIOLOGY

Magical mystery tour: MLO proteins in plant immunity and beyond

(2014) Johanna Acevedo-Garcia et al.   NEW PHYTOLOGIST

Improved asymmetry prediction for short interfering RNAs

(2013) Amanda P. Malefyt et al.   FEBS Journal

Cereal landraces genetic resources in worldwide GeneBanks. A review

(2012) Miguel A. A. Pinheiro de Carvalho et al.   Agronomy for Sustainable Development

A physical, genetic and functional sequence assembly of the barley genome

(2012)   NATURE

GenomeRNAi: a database for cell-based and in vivo RNAi phenotypes, 2013 update

(2012) Esther E. Schmidt et al.   NUCLEIC ACIDS RESEARCH

siRNA Design Software for a Target Gene-Specific RNA Interference

(2012) Yuki Naito et al.   Frontiers in Genetics

ViennaRNA Package 2.0

(2011) Ronny Lorenz et al.   Algorithms for Molecular Biology

The NumPy Array: A Structure for Efficient Numerical Computation

(2011) Stéfan van der Walt et al.   COMPUTING IN SCIENCE & ENGINEERING

Cell biology of the plant–powdery mildew interaction

(2011) Ralph Hückelhoven et al.   CURRENT OPINION IN PLANT BIOLOGY

siRNA Repositioning for Guide Strand Selection by Human Dicer Complexes

(2011) Cameron L. Noland et al.   MOLECULAR CELL

RNAi for functional genomics in plants

(2010) K. M. McGinnis   Briefings in Functional Genomics

Designing highly active siRNAs for therapeutic applications

(2010) S. Patrick Walton et al.   FEBS Journal

Structural basis for 5′-nucleotide base-specific recognition of guide RNA by human AGO2

(2010) Filipp Frank et al.   NATURE

HIGS: Host-Induced Gene Silencing in the Obligate Biotrophic Fungal PathogenBlumeria graminis

(2010) Daniela Nowara et al.   PLANT CELL

Genome Expansion and Gene Loss in Powdery Mildew Fungi Reveal Tradeoffs in Extreme Parasitism

(2010) P. D. Spanu et al.   SCIENCE

Synthetic oligoribonucleotides-containing secondary structures act as agonists of Toll-like receptors 7 and 8

(2009) Tao Lan et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Biopython: freely available Python tools for computational molecular biology and bioinformatics

(2009) P. J. A. Cock et al.   BIOINFORMATICS

siDirect 2.0: updated software for designing functional siRNA with reduced seed-dependent off-target effect

(2009) Yuki Naito et al.   BMC BIOINFORMATICS

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Calibrating the avian molecular clock

(2008) J. T. WEIR et al.   MOLECULAR ECOLOGY

The impact of target site accessibility on the design of effective siRNAs

(2008) Hakim Tafer et al.   NATURE BIOTECHNOLOGY