Exploring a Pool‐seq‐only approach for gaining population genomic insights in nonmodel species
出版年份 2019 全文链接
标题
Exploring a Pool‐seq‐only approach for gaining population genomic insights in nonmodel species
作者
关键词
-
出版物
Ecology and Evolution
Volume -, Issue -, Pages -
出版商
Wiley
发表日期
2019-09-27
DOI
10.1002/ece3.5646
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- The Chromosome-Level Genome Assembly of European Grayling Reveals Aspects of a Unique Genome Evolution Process Within Salmonids
- (2019) Tiina Sävilammi et al. G3-Genes Genomes Genetics
- Population genetic structure after 125 years of stocking in sea trout (Salmo trutta L.)
- (2018) Christoph Petereit et al. CONSERVATION GENETICS
- Microevolutionary selection dynamics acting on immune genes of the green-veined white butterfly, Pieris napi
- (2018) Naomi L.P. Keehnen et al. MOLECULAR ECOLOGY
- Chinook salmon (Oncorhynchus tshawytscha) genome and transcriptome
- (2018) Kris A. Christensen et al. PLoS One
- Genomic variation underlying complex life-history traits revealed by genome sequencing in Chinook salmon
- (2018) Shawn R. Narum et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Measuring Genetic Differentiation from Pool-seq Data
- (2018) Valentin Hivert et al. GENETICS
- Genomic consequences of a recent three-way admixture in supplemented wild brown trout populations revealed by local ancestry tracts
- (2018) Maeva Leitwein et al. MOLECULAR ECOLOGY
- Genetic variation underlying local adaptation of diapause induction along a cline in a butterfly
- (2018) Peter Pruisscher et al. MOLECULAR ECOLOGY
- The Arctic charr (Salvelinus alpinus) genome and transcriptome assembly
- (2018) Kris A. Christensen et al. PLoS One
- Theory, practice, and conservation in the age of genomics: The Galápagos giant tortoise as a case study
- (2017) Stephen J. Gaughran et al. Evolutionary Applications
- Population genomics reveals high gene flow in grass rockfish ( Sebastes rastrelliger )
- (2017) Edith Martinez et al. Marine Genomics
- Whole-genome sequencing approaches for conservation biology: Advantages, limitations and practical recommendations
- (2017) Angela P. Fuentes-Pardo et al. MOLECULAR ECOLOGY
- Investigating the genomic basis of discrete phenotypes using a Pool-Seq-only approach: New insights into the genetics underlying colour variation in diverse taxa
- (2017) Ramprasad Neethiraj et al. MOLECULAR ECOLOGY
- A Dense Brown Trout ( Salmo trutta ) Linkage Map Reveals Recent Chromosomal Rearrangements in the Salmo Genus and the Impact of Selection on Linked Neutral Diversity
- (2017) Maeva Leitwein et al. G3-Genes Genomes Genetics
- Lack of trophic polymorphism despite substantial genetic differentiation in sympatric brown trout (Salmo trutta ) populations
- (2016) Anastasia Andersson et al. ECOLOGY OF FRESHWATER FISH
- Advances in finding Alba: the locus affecting life history and color polymorphism in aColiasbutterfly
- (2016) A. Woronik et al. JOURNAL OF EVOLUTIONARY BIOLOGY
- Genome-wide nucleotide diversity of hatchery-reared Atlantic and Mediterranean strains of brown troutSalmo truttacompared to wild Mediterranean populations
- (2016) M. Leitwein et al. JOURNAL OF FISH BIOLOGY
- On the maintenance of genetic variation and adaptation to environmental change: considerations from population genomics in fishes
- (2016) L. Bernatchez JOURNAL OF FISH BIOLOGY
- Practical low-coverage genomewide sequencing of hundreds of individually barcoded samples for population and evolutionary genomics in nonmodel species
- (2016) Nina Overgaard Therkildsen et al. Molecular Ecology Resources
- The Atlantic salmon genome provides insights into rediploidization
- (2016) Sigbjørn Lien et al. NATURE
- Suitability of Different Mapping Algorithms for Genome-wide Polymorphism Scans with Pool-Seq Data
- (2016) R. Kofler et al. G3-Genes Genomes Genetics
- A SNP Based Linkage Map of the Arctic Charr ( Salvelinus alpinus ) Genome Provides Insights into the Diploidization Process After Whole Genome Duplication
- (2016) Cameron M. Nugent et al. G3-Genes Genomes Genetics
- Next Generation Sequencing of Pooled Samples: Guideline for Variants’ Filtering
- (2016) Santosh Anand et al. Scientific Reports
- BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
- (2015) Felipe A. Simão et al. BIOINFORMATICS
- Double-digest RAD sequencing using Ion Proton semiconductor platform (ddRADseq-ion) with nonmodel organisms
- (2015) Hans Recknagel et al. Molecular Ecology Resources
- Applying the hidden treasures of population biodiversity to decision making and management
- (2015) Filip A.M. Volckaert OCEAN & COASTAL MANAGEMENT
- Rcorrector: efficient and accurate error correction for Illumina RNA-seq reads
- (2015) Li Song et al. GigaScience
- Ocean's eleven: a critical evaluation of the role of population, evolutionary and molecular genetics in the management of wild fisheries
- (2015) Jennifer R Ovenden et al. FISH AND FISHERIES
- Sequencing pools of individuals — mining genome-wide polymorphism data without big funding
- (2014) Christian Schlötterer et al. NATURE REVIEWS GENETICS
- Local Adaptation at the Transcriptome Level in Brown Trout: Evidence from Early Life History Temperature Genomic Reaction Norms
- (2014) Kristian Meier et al. PLoS One
- The rainbow trout genome provides novel insights into evolution after whole-genome duplication in vertebrates
- (2014) Camille Berthelot et al. Nature Communications
- SNP ascertainment bias in population genetic analyses: Why it is important, and how to correct it
- (2013) Joseph Lachance et al. BIOESSAYS
- NextGenMap: fast and accurate read mapping in highly polymorphic genomes
- (2013) Fritz J. Sedlazeck et al. BIOINFORMATICS
- Genetic variation in brown trout Salmo trutta across the Danube, Rhine, and Elbe headwaters: a failure of the phylogeographic paradigm?
- (2013) Estelle Lerceteau-Köhler et al. BMC EVOLUTIONARY BIOLOGY
- Monitoring reveals two genetically distinct brown trout populations remaining in stable sympatry over 20 years in tiny mountain lakes
- (2013) Anna Palmé et al. CONSERVATION GENETICS
- THE GENETIC ARCHITECTURE OF REPRODUCTIVE ISOLATION DURING SPECIATION-WITH-GENE-FLOW IN LAKE WHITEFISH SPECIES PAIRS ASSESSED BY RAD SEQUENCING
- (2013) Pierre-Alexandre Gagnaire et al. EVOLUTION
- Qualimap: evaluating next-generation sequencing alignment data
- (2012) Fernando García-Alcalde et al. BIOINFORMATICS
- Testing for local adaptation in brown trout using reciprocal transplants
- (2012) Rike B Stelkens et al. BMC EVOLUTIONARY BIOLOGY
- Chromosomal differences between European and North American Atlantic salmon discovered by linkage mapping and supported by fluorescence in situ hybridization analysis
- (2012) Silje Brenna-Hansen et al. BMC GENOMICS
- Genetic monitoring reveals temporal stability over 30 years in a small, lake-resident brown trout population
- (2012) J Charlier et al. HEREDITY
- Empirical Validation of Pooled Whole Genome Population Re-Sequencing in Drosophila melanogaster
- (2012) Yuan Zhu et al. PLoS One
- PoPoolation2: identifying differentiation between populations using sequencing of pooled DNA samples (Pool-Seq)
- (2011) R. Kofler et al. BIOINFORMATICS
- An assessment of the spatial scale of local adaptation in brown trout (Salmo trutta L.): footprints of selection at microsatellite DNA loci
- (2011) K Meier et al. HEREDITY
- Full-length transcriptome assembly from RNA-Seq data without a reference genome
- (2011) Manfred G Grabherr et al. NATURE BIOTECHNOLOGY
- Integrative genomics viewer
- (2011) James T Robinson et al. NATURE BIOTECHNOLOGY
- Genome-wide genetic marker discovery and genotyping using next-generation sequencing
- (2011) John W. Davey et al. NATURE REVIEWS GENETICS
- PoPoolation: A Toolbox for Population Genetic Analysis of Next Generation Sequencing Data from Pooled Individuals
- (2011) Robert Kofler et al. PLoS One
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
- Ascertainment Biases in SNP Chips Affect Measures of Population Divergence
- (2010) A. Albrechtsen et al. MOLECULAR BIOLOGY AND EVOLUTION
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- Human-induced evolution caused by unnatural selection through harvest of wild animals
- (2009) F. W. Allendorf et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Direct mapping and alignment of protein sequences onto genomic sequence
- (2008) Osamu Gotoh BIOINFORMATICS
- genepop’007: a complete re-implementation of the genepop software for Windows and Linux
- (2007) FRANÇOIS ROUSSET Molecular Ecology Resources
Find the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
SearchAdd your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload Now